SYNPR ORF clone FXC07044

KOP
KOP Flexi HaloTag ORF List search

Flexi ORF Clone FXC07044

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Clone info.

Species

human

Clone Name

pF1KE0161 Sequence (with vector) Restriction Map

Product ID

FXC07044

HaloTag Clone PID

FHC07044

ORF Sequence

DNA sequence (795 bp)
Protein sequence (265 aa)

Linker Type

Flexi type

more Linker info

Vector Type

pF1K Vector sequence

Restriction Map

Cloning Site

SgfI-PmeI

GenBank Accession

ORF sequence is derived from [AB528244]

Gene

KIEE0161

Symbol

SYNPR

Alias : SPO

Description

synaptoporin, transcript variant 2

Original Clone ID

oc00861

Features of the cloned ORF sequence

Description

Length: 795 bp
Restriction map A Restriction map B
Genomic Structure

Features of the protein sequence

Description

Length: 265 aa
Result of homology search against CCDS protein database ( FASTA output, Multiple alignment) Entry Exp ID% symbol CCDS46860.1 7.7e-117 100.0 SYNPR CCDS46859.1 1.2e-112 100.0 SYNPR CCDS14321.1 4.8e-63 58.4 SYP CCDS41365.1 1.6e-45 48.1 SYPL2 CCDS47685.1 5.3e-37 44.5 SYPL1 The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI) [ zoom out (x2) ]
Result of InterProScan Search method interpro_ID From To Entry Definition FPrintScan IPR001285 3 25 PR00220 Synaptophysin/synaptoporin IPR001285 27 52 PR00220 Synaptophysin/synaptoporin IPR001285 81 105 PR00220 Synaptophysin/synaptoporin IPR001285 113 136 PR00220 Synaptophysin/synaptoporin IPR001285 180 198 PR00220 Synaptophysin/synaptoporin HMMPfam IPR021128 5 196 PF01284 MARVEL-like domain ProfileScan IPR008253 1 202 PS51225 Marvel
Prediction of transmembrane (TM) segments Method No. N terminal transmembrane region C terminal type length SOSUI2 1 1 MCMVIFAPLFAIFAFATCGGY 21 PRIMARY 21 2 79 AEFFVTVAVFAFLYSLAATVVYI 101 PRIMARY 23 3 114 PLIDFIVTVVFSFLWLVGSSAWA 136 PRIMARY 23 4 178 TSVVFGFLNFILWAGNIWFVFKE 200 PRIMARY 23
Result of homology search against disease genes in OMIM database(FASTA output, Multiple alignment) H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_003170 313 300802,313475 58.4 97.0 NP_874384 241 616665 44.5 81.5 NP_006745 259 616665 44.5 81.5 Inquiries or Suggestions ? Send a message to flexiclone AT kazusagt.com

ORF DNA

Cloned ORF Nucleotide sequence for pF1KE0161 Download

>KIEE0161  795 bp
ATGTGTATGGTGATATTTGCTCCGCTTTTTGCAATCTTTGCATTTGCAACATGCGGTGGC
TATTCTGGAGGCCTGCGGCTGAGTGTGGACTGCGTCAACAAGACAGAAAGTAACCTCAGC
ATCGACATAGCGTTTGCCTACCCATTCAGGTTGCACCAGGTGACGTTTGAGGTGCCCACC
TGCGAGGGAAAGGAACGGCAGAAGCTGGCATTGATTGGTGACTCCTCGTCTTCAGCAGAG
TTCTTCGTCACTGTTGCTGTCTTCGCCTTCCTCTACTCTTTGGCCGCCACTGTCGTTTAC
ATTTTCTTCCAGAACAAATACCGGGAAAACAACCGGGGCCCACTCATTGACTTCATTGTC
ACTGTAGTCTTTTCGTTCTTGTGGTTGGTGGGTTCATCAGCTTGGGCAAAAGGACTGTCT
GACGTCAAAGTTGCAACGGATCCCAAGGAAGTATTGCTACTAATGTCAGCTTGCAAACAG
CCATCCAACAAATGCATGGCTATCCACAGCCCTGTTATGTCAAGCTTAAACACTTCTGTG
GTCTTTGGATTCTTGAACTTTATTCTCTGGGCTGGAAACATATGGTTTGTTTTCAAGGAG
ACCGGCTGGCATTCTTCGGGACAGAGATATCTTTCAGATCCAATGGAGAAGCACTCCAGC
AGCTATAATCAAGGTGGTTACAACCAAGACAGCTATGGATCAAGCAGTGGGTACAGTCAG
CAGGCGAGTTTGGGGCCAACCTCAGATGAGTTTGGCCAACAGCCTACTGGCCCCACTTCC
TTTACCAATCAGATT

ORF Protein

Cloned ORF protein sequence for pF1KE0161 Download

>KIEE0161  265 aa
MCMVIFAPLFAIFAFATCGGYSGGLRLSVDCVNKTESNLSIDIAFAYPFRLHQVTFEVPT
CEGKERQKLALIGDSSSSAEFFVTVAVFAFLYSLAATVVYIFFQNKYRENNRGPLIDFIV
TVVFSFLWLVGSSAWAKGLSDVKVATDPKEVLLLMSACKQPSNKCMAIHSPVMSSLNTSV
VFGFLNFILWAGNIWFVFKETGWHSSGQRYLSDPMEKHSSSYNQGGYNQDSYGSSSGYSQ
QASLGPTSDEFGQQPTGPTSFTNQI

ORF+Vector

Nucleotide Sequence (with vector) for pF1KE0161 Download

>pF1KE0161  3908 bp
GGATCTCGATCCCGCGAAATTAATACGACTCACTATAGGGGAATTGTGAGCGGATAACAA
TTCCCCACTAGTAATAATTTTCTTTAACTTTAGTAAGGAGCGATCGCCATGTGTATGGTG
ATATTTGCTCCGCTTTTTGCAATCTTTGCATTTGCAACATGCGGTGGCTATTCTGGAGGC
CTGCGGCTGAGTGTGGACTGCGTCAACAAGACAGAAAGTAACCTCAGCATCGACATAGCG
TTTGCCTACCCATTCAGGTTGCACCAGGTGACGTTTGAGGTGCCCACCTGCGAGGGAAAG
GAACGGCAGAAGCTGGCATTGATTGGTGACTCCTCGTCTTCAGCAGAGTTCTTCGTCACT
GTTGCTGTCTTCGCCTTCCTCTACTCTTTGGCCGCCACTGTCGTTTACATTTTCTTCCAG
AACAAATACCGGGAAAACAACCGGGGCCCACTCATTGACTTCATTGTCACTGTAGTCTTT
TCGTTCTTGTGGTTGGTGGGTTCATCAGCTTGGGCAAAAGGACTGTCTGACGTCAAAGTT
GCAACGGATCCCAAGGAAGTATTGCTACTAATGTCAGCTTGCAAACAGCCATCCAACAAA
TGCATGGCTATCCACAGCCCTGTTATGTCAAGCTTAAACACTTCTGTGGTCTTTGGATTC
TTGAACTTTATTCTCTGGGCTGGAAACATATGGTTTGTTTTCAAGGAGACCGGCTGGCAT
TCTTCGGGACAGAGATATCTTTCAGATCCAATGGAGAAGCACTCCAGCAGCTATAATCAA
GGTGGTTACAACCAAGACAGCTATGGATCAAGCAGTGGGTACAGTCAGCAGGCGAGTTTG
GGGCCAACCTCAGATGAGTTTGGCCAACAGCCTACTGGCCCCACTTCCTTTACCAATCAG
ATTGTTTAAACGAATTCGAGCTCGGTACCCGGGGATCCTCTAGAGTCGACCTGCAGGCAT
GCAAGCTGATCCGGCTGCTAACAAAGCCCGAAAGGAAGCTGAGTTGGCTGCTGCCACCGC
TGAGCAATAACTAGCATAACCCCTTGGGGCCTCTAAACGGGTCTTGAGGGGTTTTTTGCT
GAAAGGAGGAACTATATCCGGTTCGCTTGCTGTCCATAAAACCGCCCAGTCTAGCTATCG
CCATGTAAGCCCACTGCAAGCTACCTGCTTTCTCTTTGCGCTTGCGTTTTCCCTTGTCCA
GATAGCCCAGTAGCTGACATTCATCCGGGGTCAGCACCGTTTCTGCGGACTGGCTTTCTA
CGTGTTCCGCTTCCTTTAGCAGCCCTTGCGCCCTGAGTGCTTGCGGCAGCGTGAGCTTCA
AAAGAATTGCCAGCTGGGGCGCCCTCTGGTAAGGTTGGGAAGCCCTGCAAAGTAAACTGG
ATGGCTTTCTTGCCGCCAAGGATCTGATGGCGCAGGGGATCAAGATCTGATCAAGAGACA
GGATGACGGTCGTTTCGCATGCTTGAACAAGATGGATTGCACGCAGGTTCTCCGGCCGCT
TGGGTGGAGAGGCTATTCGGCTATGACTGGGCACAACAGACAATCGGCTGCTCTGATGCC
GCCGTGTTCCGGCTGTCAGCGCAGGGGCGCCCGGTTCTTTTTGTCAAGACCGACCTGTCC
GGTGCCCTGAATGAACTGCAGGACGAGGCAGCGCGGCTATCGTGGCTGGCCACGACGGGC
GTTCCTTGCGCAGCTGTGCTCGACGTTGTCACTGAAGCGGGAAGGGACTGGCTGCTATTG
GGCGAAGTGCCGGGGCAGGATCTCCTGTCATCTCACCTTGCTCCTGCCGAGAAAGTATCC
ATCATGGCTGATGCAATGCGGCGGCTGCATACGCTTGATCCGGCTACCTGCCCATTCGAC
CACCAAGCGAAACATCGCATCGAGCGAGCACGCACTCGGATGGAAGCCGGTCTTGTCGAT
CAGGATGATCTGGACGAAGAGCATCAGGGGCTCGCGCCAGCCGAACTGTTCGCCAGGCTC
AAGGCGCGTATGCCGGATGGTGAGGATCTCGTCGTGACTCATGGCGATGCCTGCTTGCCG
AATATCATGGTGGAAAATGGCCGCTTTTCTGGATTCATCGACTGTGGCCGGCTGGGTGTG
GCGGACCGCTATCAGGACATAGCGTTGGCTACCCGTGATATTGCTGAAGAGCTTGGCGGC
GAATGGGCTGACCGCTTCCTCGTGCTTTACGGTATCGCCGCTCCCGATTCGCAGCGCATC
GCCTTCTATCGCCTTCTTGACGAGTTCTTCTGAGCGGGACTCTGGGGTTCGAAATGACCG
ACCAAGCGACGCCCAACCGGTATCAGCTCACTCAAAGGCGGTAATACGGTTATCCACAGA
ATCAGGGGATAACGCAGGAAAGAACATGTGAGCAAAAGGCCAGCAAAAGGCCAGGAACCG
TAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCTCCGCCCCCCTGACGAGCATCACAA
AAATCGACGCTCAAGTCAGAGGTGGCGAAACCCGACAGGACTATAAAGATACCAGGCGTT
TCCCCCTGGAAGCTCCCTCGTGCGCTCTCCTGTTCCGACCCTGCCGCTTACCGGATACCT
GTCCGCCTTTCTCCCTTCGGGAAGCGTGGCGCTTTCTCATAGCTCACGCTGTAGGTATCT
CAGTTCGGTGTAGGTCGTTCGCTCCAAGCTGGGCTGTGTGCACGAACCCCCCGTTCAGCC
CGACCGCTGCGCCTTATCCGGTAACTATCGTCTTGAGTCCAACCCGGTAAGACACGACTT
ATCGCCACTGGCAGCAGCCACTGGTAACAGGATTAGCAGAGCGAGGTATGTAGGCGGTGC
TACAGAGTTCTTGAAGTGGTGGCCTAACTACGGCTACACTAGAAGGACAGTATTTGGTAT
CTGCGCTCTGCTGAAGCCAGTTACCTTCGGAAAAAGAGTTGGTAGCTCTTGATCCGGCAA
ACAAACCACCGCTGGTAGCGGTGGTTTTTTTGTTTGCAAGCAGCAGATTACGCGCAGAAA
AAAAGGATTTCAAGAAGATCCTTTGATCTTTTCTACGGGGTCTGACGCTCAGTGGAACGA
AAACTCACGTTAAGGGATTTTGGTCATGAGATTATCAAAAAGGATCTTCACCTAGATCCT
TTTATAGTCCGGAAATACAGGAACGCACGCTGGATGGCCCTTCGCTGGGATGGTGAAACC
ATGAAAAATGGCAGCTTCAGTGGATTAAGTGGGGGTAATGTGGCCTGTACCCTCTGGTTG
CATAGGTATTCATACGGTTAAAATTTATCAGGCGCGATTGCGGCAGTTTTTCGGGTGGTT
TGTTGCCATTTTTACCTGTCTGCTGCCGTGATCGCGCTGAACGCGTTTTAGCGGTGCGTA
CAATTAAGGGATTATGGTAAATCCACTTACTGTCTGCCCTCGTAGCCATCGAGATAAACC
GCAGTACTCCGGCCACGATGCGTCCGGCGTAGAGGATCGAGATCTTTTCAGCCTGATACA
GATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGC
GGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAG
TGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTC
AGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTA
GGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGG
CAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATG
GCCTTTTTGCGTTTCTACAAACTCTTTTGTTTATTTTTCTAAATACATTCAAATATGTAT
CCGCTCAT