OTX1 ORF clone FXC03934

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Flexi ORF Clone FXC03934

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Clone info.

Species

human

Clone Name

pF1KB7602 Sequence (with vector) Restriction Map

Product ID

FXC03934

HaloTag Clone PID

FHC03934

ORF Sequence

DNA sequence (1062 bp)
Protein sequence (354 aa)

Linker Type

Flexi type

more Linker info

Vector Type

pF1K Vector sequence

Restriction Map

Cloning Site

SgfI-PmeI

GenBank Accession

ORF sequence is derived from [AB528007]

Gene

KIBB7602

Symbol

OTX1

Description

orthodenticle homeobox 1, transcript variant 1

Original Clone ID

cs00102

Features of the cloned ORF sequence

Description

Length: 1062 bp
Restriction map A Restriction map B
Genomic Structure

Features of the protein sequence

Description

Length: 354 aa
Result of homology search against CCDS protein database ( FASTA output, Multiple alignment) Entry Exp ID% symbol CCDS1873.1 7.2e-63 100.0 OTX1 CCDS41960.1 4.4e-17 57.6 OTX2 CCDS9728.1 2.4e-16 56.3 OTX2 CCDS12706.1 3.6e-11 41.4 CRX The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI) [ zoom out (x2) ]
Result of InterProScan Search method interpro_ID From To Entry Definition FPrintScan IPR003025 1 10 PR01255 Transcription factor Otx IPR003026 184 196 PR01256 Transcription factor Otx1 IPR003025 221 227 PR01255 Transcription factor Otx IPR003025 242 250 PR01255 Transcription factor Otx IPR003026 286 298 PR01256 Transcription factor Otx1 IPR003026 306 311 PR01256 Transcription factor Otx1 IPR003025 315 321 PR01255 Transcription factor Otx HMMPfam IPR001356 39 95 PF00046 Homeobox IPR013851 178 280 PF03529 Transcription factor Otx HMMSmart IPR001356 38 100 SM00389 Homeobox ProfileScan IPR001356 36 96 PS50071 Homeobox
Result of homology search against disease genes in OMIM database(FASTA output, Multiple alignment) H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_055377 354 600036 100.0 100.0 NP_001186699 354 600036 100.0 100.0 NP_758840 289 600037,610125,613986 57.6 100.0 NP_001257452 289 600037,610125,613986 57.6 100.0 NP_001257453 289 600037,610125,613986 57.6 100.0 Inquiries or Suggestions ? Send a message to flexiclone AT kazusagt.com

ORF DNA

Cloned ORF Nucleotide sequence for pF1KB7602 Download

>KIBB7602  1062 bp
ATGATGTCTTACCTCAAACAACCCCCATACGGCATGAACGGGCTGGGCCTGGCCGGGCCC
GCCATGGACCTCCTGCACCCATCCGTGGGCTATCCGGCCACTCCGCGGAAGCAGCGGCGG
GAGCGCACCACCTTCACGCGTTCACAGCTGGACGTGCTCGAGGCGCTCTTCGCCAAGACT
CGCTACCCTGACATCTTCATGCGGGAGGAGGTGGCGCTCAAGATCAACCTGCCGGAGTCT
AGAGTCCAGGTCTGGTTCAAGAACCGCCGCGCCAAATGCCGCCAGCAGCAGCAGAGCGGG
AGCGGAACCAAGAGCCGCCCAGCCAAGAAGAAGTCCTCTCCAGTGCGGGAGAGCTCGGGC
TCCGAAAGCAGTGGCCAATTCACGCCGCCAGCTGTGTCCAGCTCTGCCTCGTCCTCTAGC
TCGGCGTCCAGCTCTTCCGCCAACCCAGCGGCTGCAGCGGCTGCGGGACTAGGTGGGAAC
CCGGTGGCGGCCGCGTCGTCGCTGAGTACACCAGCTGCCTCATCTATCTGGAGCCCGGCC
TCCATCTCGCCAGGCTCAGCGCCCGCGTCCGTGTCGGTGCCGGAGCCATTGGCCGCGCCT
AGCAACACCTCGTGTATGCAGCGCTCCGTAGCTGCAGGCGCCGCCACCGCAGCAGCCTCT
TATCCCATGTCCTACGGCCAGGGCGGCAGCTACGGCCAAGGCTACCCTACGCCCTCCTCT
TCCTACTTTGGCGGCGTGGACTGCAGCTCATACCTAGCGCCCATGCACTCACATCACCAC
CCGCACCAGCTCAGCCCCATGGCACCCTCCTCCATGGCGGGCCACCATCATCACCACCCA
CATGCGCACCACCCGTTGAGCCAGTCCTCAGGCCACCACCACCACCATCACCACCACCAC
CACCAAGGCTACGGTGGCTCTGGGCTTGCCTTCAACTCTGCCGACTGCTTGGATTACAAG
GAGCCTGGCGCCGCTGCTGCTTCCTCCGCCTGGAAACTCAACTTCAACTCCCCCGACTGT
CTGGACTATAAGGACCAAGCCTCATGGCGGTTCCAGGTCTTG

ORF Protein

Cloned ORF protein sequence for pF1KB7602 Download

>KIBB7602  354 aa
MMSYLKQPPYGMNGLGLAGPAMDLLHPSVGYPATPRKQRRERTTFTRSQLDVLEALFAKT
RYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQSGSGTKSRPAKKKSSPVRESSG
SESSGQFTPPAVSSSASSSSSASSSSANPAAAAAAGLGGNPVAAASSLSTPAASSIWSPA
SISPGSAPASVSVPEPLAAPSNTSCMQRSVAAGAATAAASYPMSYGQGGSYGQGYPTPSS
SYFGGVDCSSYLAPMHSHHHPHQLSPMAPSSMAGHHHHHPHAHHPLSQSSGHHHHHHHHH
HQGYGGSGLAFNSADCLDYKEPGAAAASSAWKLNFNSPDCLDYKDQASWRFQVL

ORF+Vector

Nucleotide Sequence (with vector) for pF1KB7602 Download

>pF1KB7602  4175 bp
GGATCTCGATCCCGCGAAATTAATACGACTCACTATAGGGGAATTGTGAGCGGATAACAA
TTCCCCACTAGTAATAATTTTCTTTAACTTTAGTAAGGAGCGATCGCCATGATGTCTTAC
CTCAAACAACCCCCATACGGCATGAACGGGCTGGGCCTGGCCGGGCCCGCCATGGACCTC
CTGCACCCATCCGTGGGCTATCCGGCCACTCCGCGGAAGCAGCGGCGGGAGCGCACCACC
TTCACGCGTTCACAGCTGGACGTGCTCGAGGCGCTCTTCGCCAAGACTCGCTACCCTGAC
ATCTTCATGCGGGAGGAGGTGGCGCTCAAGATCAACCTGCCGGAGTCTAGAGTCCAGGTC
TGGTTCAAGAACCGCCGCGCCAAATGCCGCCAGCAGCAGCAGAGCGGGAGCGGAACCAAG
AGCCGCCCAGCCAAGAAGAAGTCCTCTCCAGTGCGGGAGAGCTCGGGCTCCGAAAGCAGT
GGCCAATTCACGCCGCCAGCTGTGTCCAGCTCTGCCTCGTCCTCTAGCTCGGCGTCCAGC
TCTTCCGCCAACCCAGCGGCTGCAGCGGCTGCGGGACTAGGTGGGAACCCGGTGGCGGCC
GCGTCGTCGCTGAGTACACCAGCTGCCTCATCTATCTGGAGCCCGGCCTCCATCTCGCCA
GGCTCAGCGCCCGCGTCCGTGTCGGTGCCGGAGCCATTGGCCGCGCCTAGCAACACCTCG
TGTATGCAGCGCTCCGTAGCTGCAGGCGCCGCCACCGCAGCAGCCTCTTATCCCATGTCC
TACGGCCAGGGCGGCAGCTACGGCCAAGGCTACCCTACGCCCTCCTCTTCCTACTTTGGC
GGCGTGGACTGCAGCTCATACCTAGCGCCCATGCACTCACATCACCACCCGCACCAGCTC
AGCCCCATGGCACCCTCCTCCATGGCGGGCCACCATCATCACCACCCACATGCGCACCAC
CCGTTGAGCCAGTCCTCAGGCCACCACCACCACCATCACCACCACCACCACCAAGGCTAC
GGTGGCTCTGGGCTTGCCTTCAACTCTGCCGACTGCTTGGATTACAAGGAGCCTGGCGCC
GCTGCTGCTTCCTCCGCCTGGAAACTCAACTTCAACTCCCCCGACTGTCTGGACTATAAG
GACCAAGCCTCATGGCGGTTCCAGGTCTTGGTTTAAACGAATTCGAGCTCGGTACCCGGG
GATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTGATCCGGCTGCTAACAAAGCCCGAAA
GGAAGCTGAGTTGGCTGCTGCCACCGCTGAGCAATAACTAGCATAACCCCTTGGGGCCTC
TAAACGGGTCTTGAGGGGTTTTTTGCTGAAAGGAGGAACTATATCCGGTTCGCTTGCTGT
CCATAAAACCGCCCAGTCTAGCTATCGCCATGTAAGCCCACTGCAAGCTACCTGCTTTCT
CTTTGCGCTTGCGTTTTCCCTTGTCCAGATAGCCCAGTAGCTGACATTCATCCGGGGTCA
GCACCGTTTCTGCGGACTGGCTTTCTACGTGTTCCGCTTCCTTTAGCAGCCCTTGCGCCC
TGAGTGCTTGCGGCAGCGTGAGCTTCAAAAGAATTGCCAGCTGGGGCGCCCTCTGGTAAG
GTTGGGAAGCCCTGCAAAGTAAACTGGATGGCTTTCTTGCCGCCAAGGATCTGATGGCGC
AGGGGATCAAGATCTGATCAAGAGACAGGATGACGGTCGTTTCGCATGCTTGAACAAGAT
GGATTGCACGCAGGTTCTCCGGCCGCTTGGGTGGAGAGGCTATTCGGCTATGACTGGGCA
CAACAGACAATCGGCTGCTCTGATGCCGCCGTGTTCCGGCTGTCAGCGCAGGGGCGCCCG
GTTCTTTTTGTCAAGACCGACCTGTCCGGTGCCCTGAATGAACTGCAGGACGAGGCAGCG
CGGCTATCGTGGCTGGCCACGACGGGCGTTCCTTGCGCAGCTGTGCTCGACGTTGTCACT
GAAGCGGGAAGGGACTGGCTGCTATTGGGCGAAGTGCCGGGGCAGGATCTCCTGTCATCT
CACCTTGCTCCTGCCGAGAAAGTATCCATCATGGCTGATGCAATGCGGCGGCTGCATACG
CTTGATCCGGCTACCTGCCCATTCGACCACCAAGCGAAACATCGCATCGAGCGAGCACGC
ACTCGGATGGAAGCCGGTCTTGTCGATCAGGATGATCTGGACGAAGAGCATCAGGGGCTC
GCGCCAGCCGAACTGTTCGCCAGGCTCAAGGCGCGTATGCCGGATGGTGAGGATCTCGTC
GTGACTCATGGCGATGCCTGCTTGCCGAATATCATGGTGGAAAATGGCCGCTTTTCTGGA
TTCATCGACTGTGGCCGGCTGGGTGTGGCGGACCGCTATCAGGACATAGCGTTGGCTACC
CGTGATATTGCTGAAGAGCTTGGCGGCGAATGGGCTGACCGCTTCCTCGTGCTTTACGGT
ATCGCCGCTCCCGATTCGCAGCGCATCGCCTTCTATCGCCTTCTTGACGAGTTCTTCTGA
GCGGGACTCTGGGGTTCGAAATGACCGACCAAGCGACGCCCAACCGGTATCAGCTCACTC
AAAGGCGGTAATACGGTTATCCACAGAATCAGGGGATAACGCAGGAAAGAACATGTGAGC
AAAAGGCCAGCAAAAGGCCAGGAACCGTAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAG
GCTCCGCCCCCCTGACGAGCATCACAAAAATCGACGCTCAAGTCAGAGGTGGCGAAACCC
GACAGGACTATAAAGATACCAGGCGTTTCCCCCTGGAAGCTCCCTCGTGCGCTCTCCTGT
TCCGACCCTGCCGCTTACCGGATACCTGTCCGCCTTTCTCCCTTCGGGAAGCGTGGCGCT
TTCTCATAGCTCACGCTGTAGGTATCTCAGTTCGGTGTAGGTCGTTCGCTCCAAGCTGGG
CTGTGTGCACGAACCCCCCGTTCAGCCCGACCGCTGCGCCTTATCCGGTAACTATCGTCT
TGAGTCCAACCCGGTAAGACACGACTTATCGCCACTGGCAGCAGCCACTGGTAACAGGAT
TAGCAGAGCGAGGTATGTAGGCGGTGCTACAGAGTTCTTGAAGTGGTGGCCTAACTACGG
CTACACTAGAAGGACAGTATTTGGTATCTGCGCTCTGCTGAAGCCAGTTACCTTCGGAAA
AAGAGTTGGTAGCTCTTGATCCGGCAAACAAACCACCGCTGGTAGCGGTGGTTTTTTTGT
TTGCAAGCAGCAGATTACGCGCAGAAAAAAAGGATTTCAAGAAGATCCTTTGATCTTTTC
TACGGGGTCTGACGCTCAGTGGAACGAAAACTCACGTTAAGGGATTTTGGTCATGAGATT
ATCAAAAAGGATCTTCACCTAGATCCTTTTATAGTCCGGAAATACAGGAACGCACGCTGG
ATGGCCCTTCGCTGGGATGGTGAAACCATGAAAAATGGCAGCTTCAGTGGATTAAGTGGG
GGTAATGTGGCCTGTACCCTCTGGTTGCATAGGTATTCATACGGTTAAAATTTATCAGGC
GCGATTGCGGCAGTTTTTCGGGTGGTTTGTTGCCATTTTTACCTGTCTGCTGCCGTGATC
GCGCTGAACGCGTTTTAGCGGTGCGTACAATTAAGGGATTATGGTAAATCCACTTACTGT
CTGCCCTCGTAGCCATCGAGATAAACCGCAGTACTCCGGCCACGATGCGTCCGGCGTAGA
GGATCGAGATCTTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAA
ACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGA
AGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTG
CCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTT
GTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTG
CGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAA
TTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACAAACTCTTTTGTTTA
TTTTTCTAAATACATTCAAATATGTATCCGCTCAT