LHX1 ORF clone FXC02613

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Flexi ORF Clone FXC02613

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Clone info.

Species

human

Clone Name

pF1KB8143 Sequence (with vector) Restriction Map

Product ID

FXC02613

HaloTag Clone PID

FHC02613

Original Clone PID

ORK02613

ORF Sequence

DNA sequence (1218 bp)
Protein sequence (406 aa)

Linker Type

Flexi type

more Linker info

Vector Type

pF1K Vector sequence

Restriction Map

Cloning Site

SgfI-PmeI

GenBank Accession

ORF sequence is derived from [AB463836]

Gene

KIBB8143

Symbol

LHX1

Alias : LIM-1, LIM1

Description

LIM homeobox 1

Original Clone ID

cp00503

Features of the cloned ORF sequence

Description

Length: 1218 bp
Restriction map A Restriction map B
Genomic Structure

Features of the protein sequence

Description

Length: 406 aa
Result of homology search against CCDS protein database ( FASTA output, Multiple alignment) Entry Exp ID% symbol CCDS11316.1 4.6e-82 100.0 LHX1 CCDS9171.1 1.6e-59 74.6 LHX5 CCDS1338.1 7e-12 37.0 LHX4 CCDS6994.1 2.9e-11 39.5 LHX3 CCDS6995.1 2.9e-11 39.5 LHX3 The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI) [ zoom out (x2) ]
Result of InterProScan Search method interpro_ID From To Entry Definition HMMPfam IPR001781 4 59 PF00412 Zinc finger IPR001781 63 120 PF00412 Zinc finger IPR001356 181 237 PF00046 Homeobox HMMSmart IPR001781 3 54 SM00132 Zinc finger IPR001781 62 117 SM00132 Zinc finger IPR001356 180 242 SM00389 Homeobox ProfileScan IPR001781 2 61 PS50023 Zinc finger IPR001781 62 124 PS50023 Zinc finger IPR001356 178 238 PS50071 Homeobox
Result of homology search against disease genes in OMIM database(FASTA output, Multiple alignment) H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_005559 406 601999 100.0 100.0 NP_071758 402 605992 74.6 100.0 NP_203129 390 262700,602146 37.0 97.5 XP_016870657 373 221750,600577 39.5 97.8 XP_005263467 386 221750,600577 39.5 97.8 Inquiries or Suggestions ? Send a message to flexiclone AT kazusagt.com

ORF DNA

Cloned ORF Nucleotide sequence for pF1KB8143 Download

>KIBB8143  1218 bp
ATGGTTCACTGTGCCGGCTGCAAAAGGCCCATCCTGGACCGCTTTCTCTTGAACGTGCTG
GACAGGGCCTGGCACGTCAAGTGCGTCCAGTGCTGTGAATGTAAATGCAACCTGACCGAG
AAGTGCTTCTCCAGGGAAGGCAAACTCTACTGCAAGAACGACTTCTTCCGGTGTTTCGGT
ACCAAATGCGCAGGCTGCGCTCAGGGCATCTCCCCTAGCGACCTGGTGCGGAGAGCGCGG
AGCAAAGTGTTTCACCTGAACTGCTTCACCTGCATGATGTGTAACAAGCAGCTCTCCACT
GGCGAGGAACTCTACATCATCGACGAGAATAAGTTCGTCTGCAAAGAGGATTACCTAAGT
AACAGCAGTGTTGCCAAAGAGAACAGCCTTCACTCGGCCACCACGGGCAGTGACCCCAGT
TTGTCTCCGGATTCCCAAGACCCGTCGCAGGACGACGCCAAGGACTCGGAGAGCGCCAAC
GTGTCGGACAAGGAAGCGGGTAGCAACGAGAATGACGACCAGAACCTGGGCGCCAAGCGG
CGGGGACCGCGCACCACCATCAAAGCCAAGCAGCTGGAGACGCTGAAGGCCGCCTTCGCT
GCTACACCCAAGCCCACCCGCCACATCCGCGAGCAGCTGGCGCAGGAGACCGGCCTCAAC
ATGCGCGTCATTCAGGTCTGGTTCCAGAACCGGCGCTCCAAGGAGCGGAGGATGAAGCAG
CTGAGCGCCCTGGGCGCCCGGCGCCACGCCTTCTTCCGCAGTCCGCGCCGGATGCGGCCG
CTGGTGGACCGCCTGGAGCCGGGCGAGCTCATCCCCAATGGTCCCTTCTCCTTCTACGGA
GATTACCAGAGCGAGTACTACGGGCCCGGGGGCAACTACGACTTCTTCCCGCAAGGCCCC
CCGTCCTCGCAGGCCCAGACACCAGTGGACCTACCCTTCGTGCCGTCATCTGGGCCGTCC
GGGACGCCCCTGGGTGGCCTGGAGCACCCGCTGCCGGGCCACCACCCGTCGAGCGAGGCG
CAGCGGTTTACCGACATCCTGGCGCACCCACCCGGGGACTCGCCCAGCCCCGAGCCCAGC
CTGCCCGGGCCTCTGCACTCCATGTCGGCCGAGGTCTTCGGACCCAGCCCGCCCTTCTCG
TCGCTGTCGGTCAACGGTGGGGCGAGCTACGGAAACCACCTGTCCCACCCCCCCGAAATG
AACGAGGCGGCCGTGTGG

ORF Protein

Cloned ORF protein sequence for pF1KB8143 Download

>KIBB8143  406 aa
MVHCAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTEKCFSREGKLYCKNDFFRCFG
TKCAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDYLS
NSSVAKENSLHSATTGSDPSLSPDSQDPSQDDAKDSESANVSDKEAGSNENDDQNLGAKR
RGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQ
LSALGARRHAFFRSPRRMRPLVDRLEPGELIPNGPFSFYGDYQSEYYGPGGNYDFFPQGP
PSSQAQTPVDLPFVPSSGPSGTPLGGLEHPLPGHHPSSEAQRFTDILAHPPGDSPSPEPS
LPGPLHSMSAEVFGPSPPFSSLSVNGGASYGNHLSHPPEMNEAAVW

ORF+Vector

Nucleotide Sequence (with vector) for pF1KB8143 Download

>pF1KB8143  4331 bp
GGATCTCGATCCCGCGAAATTAATACGACTCACTATAGGGGAATTGTGAGCGGATAACAA
TTCCCCACTAGTAATAATTTTCTTTAACTTTAGTAAGGAGCGATCGCCATGGTTCACTGT
GCCGGCTGCAAAAGGCCCATCCTGGACCGCTTTCTCTTGAACGTGCTGGACAGGGCCTGG
CACGTCAAGTGCGTCCAGTGCTGTGAATGTAAATGCAACCTGACCGAGAAGTGCTTCTCC
AGGGAAGGCAAACTCTACTGCAAGAACGACTTCTTCCGGTGTTTCGGTACCAAATGCGCA
GGCTGCGCTCAGGGCATCTCCCCTAGCGACCTGGTGCGGAGAGCGCGGAGCAAAGTGTTT
CACCTGAACTGCTTCACCTGCATGATGTGTAACAAGCAGCTCTCCACTGGCGAGGAACTC
TACATCATCGACGAGAATAAGTTCGTCTGCAAAGAGGATTACCTAAGTAACAGCAGTGTT
GCCAAAGAGAACAGCCTTCACTCGGCCACCACGGGCAGTGACCCCAGTTTGTCTCCGGAT
TCCCAAGACCCGTCGCAGGACGACGCCAAGGACTCGGAGAGCGCCAACGTGTCGGACAAG
GAAGCGGGTAGCAACGAGAATGACGACCAGAACCTGGGCGCCAAGCGGCGGGGACCGCGC
ACCACCATCAAAGCCAAGCAGCTGGAGACGCTGAAGGCCGCCTTCGCTGCTACACCCAAG
CCCACCCGCCACATCCGCGAGCAGCTGGCGCAGGAGACCGGCCTCAACATGCGCGTCATT
CAGGTCTGGTTCCAGAACCGGCGCTCCAAGGAGCGGAGGATGAAGCAGCTGAGCGCCCTG
GGCGCCCGGCGCCACGCCTTCTTCCGCAGTCCGCGCCGGATGCGGCCGCTGGTGGACCGC
CTGGAGCCGGGCGAGCTCATCCCCAATGGTCCCTTCTCCTTCTACGGAGATTACCAGAGC
GAGTACTACGGGCCCGGGGGCAACTACGACTTCTTCCCGCAAGGCCCCCCGTCCTCGCAG
GCCCAGACACCAGTGGACCTACCCTTCGTGCCGTCATCTGGGCCGTCCGGGACGCCCCTG
GGTGGCCTGGAGCACCCGCTGCCGGGCCACCACCCGTCGAGCGAGGCGCAGCGGTTTACC
GACATCCTGGCGCACCCACCCGGGGACTCGCCCAGCCCCGAGCCCAGCCTGCCCGGGCCT
CTGCACTCCATGTCGGCCGAGGTCTTCGGACCCAGCCCGCCCTTCTCGTCGCTGTCGGTC
AACGGTGGGGCGAGCTACGGAAACCACCTGTCCCACCCCCCCGAAATGAACGAGGCGGCC
GTGTGGGTTTAAACGAATTCGAGCTCGGTACCCGGGGATCCTCTAGAGTCGACCTGCAGG
CATGCAAGCTGATCCGGCTGCTAACAAAGCCCGAAAGGAAGCTGAGTTGGCTGCTGCCAC
CGCTGAGCAATAACTAGCATAACCCCTTGGGGCCTCTAAACGGGTCTTGAGGGGTTTTTT
GCTGAAAGGAGGAACTATATCCGGTTCGCTTGCTGTCCATAAAACCGCCCAGTCTAGCTA
TCGCCATGTAAGCCCACTGCAAGCTACCTGCTTTCTCTTTGCGCTTGCGTTTTCCCTTGT
CCAGATAGCCCAGTAGCTGACATTCATCCGGGGTCAGCACCGTTTCTGCGGACTGGCTTT
CTACGTGTTCCGCTTCCTTTAGCAGCCCTTGCGCCCTGAGTGCTTGCGGCAGCGTGAGCT
TCAAAAGAATTGCCAGCTGGGGCGCCCTCTGGTAAGGTTGGGAAGCCCTGCAAAGTAAAC
TGGATGGCTTTCTTGCCGCCAAGGATCTGATGGCGCAGGGGATCAAGATCTGATCAAGAG
ACAGGATGACGGTCGTTTCGCATGCTTGAACAAGATGGATTGCACGCAGGTTCTCCGGCC
GCTTGGGTGGAGAGGCTATTCGGCTATGACTGGGCACAACAGACAATCGGCTGCTCTGAT
GCCGCCGTGTTCCGGCTGTCAGCGCAGGGGCGCCCGGTTCTTTTTGTCAAGACCGACCTG
TCCGGTGCCCTGAATGAACTGCAGGACGAGGCAGCGCGGCTATCGTGGCTGGCCACGACG
GGCGTTCCTTGCGCAGCTGTGCTCGACGTTGTCACTGAAGCGGGAAGGGACTGGCTGCTA
TTGGGCGAAGTGCCGGGGCAGGATCTCCTGTCATCTCACCTTGCTCCTGCCGAGAAAGTA
TCCATCATGGCTGATGCAATGCGGCGGCTGCATACGCTTGATCCGGCTACCTGCCCATTC
GACCACCAAGCGAAACATCGCATCGAGCGAGCACGCACTCGGATGGAAGCCGGTCTTGTC
GATCAGGATGATCTGGACGAAGAGCATCAGGGGCTCGCGCCAGCCGAACTGTTCGCCAGG
CTCAAGGCGCGTATGCCGGATGGTGAGGATCTCGTCGTGACTCATGGCGATGCCTGCTTG
CCGAATATCATGGTGGAAAATGGCCGCTTTTCTGGATTCATCGACTGTGGCCGGCTGGGT
GTGGCGGACCGCTATCAGGACATAGCGTTGGCTACCCGTGATATTGCTGAAGAGCTTGGC
GGCGAATGGGCTGACCGCTTCCTCGTGCTTTACGGTATCGCCGCTCCCGATTCGCAGCGC
ATCGCCTTCTATCGCCTTCTTGACGAGTTCTTCTGAGCGGGACTCTGGGGTTCGAAATGA
CCGACCAAGCGACGCCCAACCGGTATCAGCTCACTCAAAGGCGGTAATACGGTTATCCAC
AGAATCAGGGGATAACGCAGGAAAGAACATGTGAGCAAAAGGCCAGCAAAAGGCCAGGAA
CCGTAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCTCCGCCCCCCTGACGAGCATCA
CAAAAATCGACGCTCAAGTCAGAGGTGGCGAAACCCGACAGGACTATAAAGATACCAGGC
GTTTCCCCCTGGAAGCTCCCTCGTGCGCTCTCCTGTTCCGACCCTGCCGCTTACCGGATA
CCTGTCCGCCTTTCTCCCTTCGGGAAGCGTGGCGCTTTCTCATAGCTCACGCTGTAGGTA
TCTCAGTTCGGTGTAGGTCGTTCGCTCCAAGCTGGGCTGTGTGCACGAACCCCCCGTTCA
GCCCGACCGCTGCGCCTTATCCGGTAACTATCGTCTTGAGTCCAACCCGGTAAGACACGA
CTTATCGCCACTGGCAGCAGCCACTGGTAACAGGATTAGCAGAGCGAGGTATGTAGGCGG
TGCTACAGAGTTCTTGAAGTGGTGGCCTAACTACGGCTACACTAGAAGGACAGTATTTGG
TATCTGCGCTCTGCTGAAGCCAGTTACCTTCGGAAAAAGAGTTGGTAGCTCTTGATCCGG
CAAACAAACCACCGCTGGTAGCGGTGGTTTTTTTGTTTGCAAGCAGCAGATTACGCGCAG
AAAAAAAGGATTTCAAGAAGATCCTTTGATCTTTTCTACGGGGTCTGACGCTCAGTGGAA
CGAAAACTCACGTTAAGGGATTTTGGTCATGAGATTATCAAAAAGGATCTTCACCTAGAT
CCTTTTATAGTCCGGAAATACAGGAACGCACGCTGGATGGCCCTTCGCTGGGATGGTGAA
ACCATGAAAAATGGCAGCTTCAGTGGATTAAGTGGGGGTAATGTGGCCTGTACCCTCTGG
TTGCATAGGTATTCATACGGTTAAAATTTATCAGGCGCGATTGCGGCAGTTTTTCGGGTG
GTTTGTTGCCATTTTTACCTGTCTGCTGCCGTGATCGCGCTGAACGCGTTTTAGCGGTGC
GTACAATTAAGGGATTATGGTAAATCCACTTACTGTCTGCCCTCGTAGCCATCGAGATAA
ACCGCAGTACTCCGGCCACGATGCGTCCGGCGTAGAGGATCGAGATCTTTTCAGCCTGAT
ACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAG
CGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGG
TAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGG
CTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGA
GTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGC
GGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGG
ATGGCCTTTTTGCGTTTCTACAAACTCTTTTGTTTATTTTTCTAAATACATTCAAATATG
TATCCGCTCAT