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SpecieshumanProduct IDFXC01724Cloning SiteSgfI-PmeIGeneKIBB3206SymbolPCDHB12
Alias : PCDH-BETA12Descriptionprotocadherin beta 12Original Clone IDfh04242
Length: 2385 bp
Restriction map A
Restriction map B
Genomic Structure
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Length: 795 aa
Result of homology search against CCDS protein database (
FASTA output,
Multiple alignment)
Entry Exp ID% symbol CCDS4254.1 0 100.0 PCDHB12 CCDS4253.1 0 88.8 PCDHB11 CCDS4256.1 0 76.0 PCDHB14 CCDS4249.1 0 75.0 PCDHB7 CCDS4245.1 0 74.7 PCDHB3
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)
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Result of InterProScan
Search method interpro_ID From To Entry Definition FPrintScan IPR002126 73 92 PR00205 Cadherin IPR002126 242 271 PR00205 Cadherin IPR002126 314 326 PR00205 Cadherin IPR002126 326 345 PR00205 Cadherin IPR002126 449 462 PR00205 Cadherin IPR002126 509 535 PR00205 Cadherin IPR002126 543 560 PR00205 Cadherin HMMPfam IPR013164 31 112 PF08266 Cadherin IPR002126 141 232 PF00028 Cadherin IPR002126 247 337 PF00028 Cadherin IPR002126 356 441 PF00028 Cadherin IPR002126 458 552 PF00028 Cadherin IPR002126 581 661 PF00028 Cadherin HMMSmart IPR002126 54 131 SM00112 Cadherin IPR002126 155 240 SM00112 Cadherin IPR002126 264 345 SM00112 Cadherin IPR002126 368 449 SM00112 Cadherin IPR002126 473 559 SM00112 Cadherin IPR002126 589 670 SM00112 Cadherin ProfileScan IPR002126 75 133 PS50268 Cadherin IPR002126 134 242 PS50268 Cadherin IPR002126 243 347 PS50268 Cadherin IPR002126 348 451 PS50268 Cadherin IPR002126 452 561 PS50268 Cadherin IPR002126 580 671 PS50268 Cadherin
Prediction of transmembrane (TM) segments
Method No. N terminal transmembrane region C terminal type length SOSUI2 1 689 YLVVALASVSSLFLFSVLLFVAV 711 PRIMARY 23
Result of homology search against disease genes in OMIM database(FASTA output,
Multiple alignment)
H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_061755 795 606338 100.0 100.0 NP_061754 797 606337 88.8 100.0 NP_061757 798 606340 76.0 100.0 NP_061763 793 606333 75.0 100.0 NP_061760 796 606329 74.7 100.0 Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.comCloned ORF Nucleotide sequence for pF1KB3206 Download>KIBB3206 2385 bp ATGGAAAACGGAGGGGCAGGCACTCTGCAGATAAGGCAAGTCCTGCTTTTCTTTGTTTTG CTGGGAATGTCTCAGGCGGGCTCTGAAACTGGGAACTTTTTGGTGATGGAGGAATTGCAG AGCGGGAGCTTTGTAGGAAATTTGGCAAAGACCCTGGGACTCGAGGTGAGTGAGCTGTCT TCGCGGGGGGCTCGGGTGGTTTCTAATGATAACAAAGAGTGTTTGCAGCTGGACACAAAC ACTGGGGATTTGCTCCTGAGAGAAATGCTAGACAGGGAGGAGCTCTGTGGCTCCAATGAG CCTTGTGTGCTGTATTTCCAAGTGTTAATGAAAAACCCCACGCAGTTTTTACAAATTGAG CTCCAGGTCAGGGATATAAATGATCACTCTCCCGTCTTCTTGGAAAAAGAAATGCTCTTA GAAATCCCAGAGAACAGTCCTGTTGGTGCTGTGTTCTTGCTTGAAAGTGCAAAGGATTTA GATGTAGGAATCAATGCTGTAAAAAGCTACACAATAAATCCGAACTCTCATTTCCACGTT AAAATAAGAGTCAATCCAGACAATAGGAAATACCCTGAGTTAGTTCTGGACAAGGCGCTG GATTATGAAGAGCGCCCGGAGCTCAGTTTCATCCTCACTGCTCTGGATGGCGGGTCCCCT CCCAGGTCTGGAACTGCCTTGGTCAGGGTGGTGGTTGTAGATATTAATGACAACTCCCCT GAGTTTGAGCAGGCTTTTTATGAGGTGAAGATTCTGGAGAATAGCATCCTTGGCTCCCTG GTTGTGACCGTCTCAGCCTGGGATTTAGACTCTGGAACAAACAGTGAACTATCCTATACC TTTTCCCATGCCTCAGAAGATATTCGCAAGACATTTGAAATTAATCAAAAGTCTGGTGAC ATTACTTTAACAGCACCTTTGGATTTTGAAGCAATTGAGTCATACTCAATAATCATTCAA GCCACAGATGGGGGAGGACTTTTTGGAAAATCTACAGTCAGAATTCAGGTGATGGATGTA AACGACAACGCTCCTGAAATCACTGTGTCATCAATTACCAGTCCAATCCCAGAAAACACT CCAGAGACTGTGGTTATGGTTTTCAGGATACGAGACAGAGACTCTGGGGACAACGGAAAG ATGGTTTGTTCTATCCCGGAGGACATCCCATTCGTGCTAAAATCTTCGGTAAATAATTAC TACACTTTGGAAACAGAGAGACCGCTGGACAGAGAGAGCAGAGCCGAGTACAACATCACC ATCACCGTCACCGACTTGGGGACCCCCAGGCTAAAAACCGAGCACAACATAACCGTGCTG GTCTCCGACGTCAATGACAACGCCCCCGCCTTCACCCAAACTTCCTACGCCCTGTTCGTC CGCGAGAACAACAGCCCCGCCCTGCACATCGGCAGCATCAGCGCCACAGACAGAGACTCG GGCACCAACGCCCAGGTCAACTACTCGCTGCTGCCGTCCCAGGACCCGCACCTGCCCCTC GCCTCCCTGGTCTCCATCAACGCGGACAACGGCCACCTGTTTGCCCTCAGGTCGCTGGAC TACGAGGCCCTGCAGGGGTTCCAGTTCCGCGTGGGCGCCACAGACCACGGCTCCCCGGCT TTGAGCAGCGAGGCGCTGGTGCGCGTGCTGGTGCTGGACGCCAACGACAACTCGCCCTTC GTGCTGTACCCGCTGCAGAACGGCTCCGCGCCCTGCACCGAGCTGGTGCCCTGGGCGGCC GAGCCGGGCTACCTGGTGACCAAGGTGGTGGCGGTGGACGGTGACTCGGGCCAGAACGCC TGGCTGTCGTACCAGCTGCTCAAGGCCACGGAGCCCGGGCTATTCGGCGTGTGGGCGCAC AATGGCGAGGTGCGCACCGCCAGGCTGCTGAGCGAGCGCGACGCGGCCAAGCACAGGCTG GTGGTGCTGGTCAAGGACAATGGCGAGCCTCCGCGCTCGGCCACCGCCACGCTGCACGTG CTCCTGGTGGACGGCTTCTCCCAGCCCTACCTGCCTCTCCCGGAGGCGGCCCCGGCCCAG GCCCAGGCCGACTCGCTCACTGTCTACCTGGTGGTGGCGTTGGCCTCAGTGTCGTCGCTC TTCCTCTTCTCGGTGCTCCTGTTCGTGGCGGTGCGGCTGTGCAGGAGGAGCAGGGCGGCC CCGGTCGGTCGCTGCTCGGTGCCTGAGGGCCCCTTTCCAGGACATCTGGTGGACGTGAGT GGCACCGGGACCCTGTCCCAGAGCTACCACTATGAGGTGTGTGTGACTGGAGGCTCCAGG TCAAATAAGTTCAAATTTCTGAAACCAATTATCCCCAACTTCCTACCCCAGAGCACAGGT AGTGAAGTCGAAGAAAATCCCCCATTTCAGAATAATTTGGGTTTC
Cloned ORF protein sequence for pF1KB3206 Download>KIBB3206 795 aa MENGGAGTLQIRQVLLFFVLLGMSQAGSETGNFLVMEELQSGSFVGNLAKTLGLEVSELS SRGARVVSNDNKECLQLDTNTGDLLLREMLDREELCGSNEPCVLYFQVLMKNPTQFLQIE LQVRDINDHSPVFLEKEMLLEIPENSPVGAVFLLESAKDLDVGINAVKSYTINPNSHFHV KIRVNPDNRKYPELVLDKALDYEERPELSFILTALDGGSPPRSGTALVRVVVVDINDNSP EFEQAFYEVKILENSILGSLVVTVSAWDLDSGTNSELSYTFSHASEDIRKTFEINQKSGD ITLTAPLDFEAIESYSIIIQATDGGGLFGKSTVRIQVMDVNDNAPEITVSSITSPIPENT PETVVMVFRIRDRDSGDNGKMVCSIPEDIPFVLKSSVNNYYTLETERPLDRESRAEYNIT ITVTDLGTPRLKTEHNITVLVSDVNDNAPAFTQTSYALFVRENNSPALHIGSISATDRDS GTNAQVNYSLLPSQDPHLPLASLVSINADNGHLFALRSLDYEALQGFQFRVGATDHGSPA LSSEALVRVLVLDANDNSPFVLYPLQNGSAPCTELVPWAAEPGYLVTKVVAVDGDSGQNA WLSYQLLKATEPGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHV LLVDGFSQPYLPLPEAAPAQAQADSLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAA PVGRCSVPEGPFPGHLVDVSGTGTLSQSYHYEVCVTGGSRSNKFKFLKPIIPNFLPQSTG SEVEENPPFQNNLGF
Nucleotide Sequence (with vector) for pF1KB3206 Download>pF1KB3206 5498 bp GGATCTCGATCCCGCGAAATTAATACGACTCACTATAGGGGAATTGTGAGCGGATAACAA TTCCCCACTAGTAATAATTTTCTTTAACTTTAGTAAGGAGCGATCGCCATGGAAAACGGA GGGGCAGGCACTCTGCAGATAAGGCAAGTCCTGCTTTTCTTTGTTTTGCTGGGAATGTCT CAGGCGGGCTCTGAAACTGGGAACTTTTTGGTGATGGAGGAATTGCAGAGCGGGAGCTTT GTAGGAAATTTGGCAAAGACCCTGGGACTCGAGGTGAGTGAGCTGTCTTCGCGGGGGGCT CGGGTGGTTTCTAATGATAACAAAGAGTGTTTGCAGCTGGACACAAACACTGGGGATTTG CTCCTGAGAGAAATGCTAGACAGGGAGGAGCTCTGTGGCTCCAATGAGCCTTGTGTGCTG TATTTCCAAGTGTTAATGAAAAACCCCACGCAGTTTTTACAAATTGAGCTCCAGGTCAGG GATATAAATGATCACTCTCCCGTCTTCTTGGAAAAAGAAATGCTCTTAGAAATCCCAGAG AACAGTCCTGTTGGTGCTGTGTTCTTGCTTGAAAGTGCAAAGGATTTAGATGTAGGAATC AATGCTGTAAAAAGCTACACAATAAATCCGAACTCTCATTTCCACGTTAAAATAAGAGTC AATCCAGACAATAGGAAATACCCTGAGTTAGTTCTGGACAAGGCGCTGGATTATGAAGAG CGCCCGGAGCTCAGTTTCATCCTCACTGCTCTGGATGGCGGGTCCCCTCCCAGGTCTGGA ACTGCCTTGGTCAGGGTGGTGGTTGTAGATATTAATGACAACTCCCCTGAGTTTGAGCAG GCTTTTTATGAGGTGAAGATTCTGGAGAATAGCATCCTTGGCTCCCTGGTTGTGACCGTC TCAGCCTGGGATTTAGACTCTGGAACAAACAGTGAACTATCCTATACCTTTTCCCATGCC TCAGAAGATATTCGCAAGACATTTGAAATTAATCAAAAGTCTGGTGACATTACTTTAACA GCACCTTTGGATTTTGAAGCAATTGAGTCATACTCAATAATCATTCAAGCCACAGATGGG GGAGGACTTTTTGGAAAATCTACAGTCAGAATTCAGGTGATGGATGTAAACGACAACGCT CCTGAAATCACTGTGTCATCAATTACCAGTCCAATCCCAGAAAACACTCCAGAGACTGTG GTTATGGTTTTCAGGATACGAGACAGAGACTCTGGGGACAACGGAAAGATGGTTTGTTCT ATCCCGGAGGACATCCCATTCGTGCTAAAATCTTCGGTAAATAATTACTACACTTTGGAA ACAGAGAGACCGCTGGACAGAGAGAGCAGAGCCGAGTACAACATCACCATCACCGTCACC GACTTGGGGACCCCCAGGCTAAAAACCGAGCACAACATAACCGTGCTGGTCTCCGACGTC AATGACAACGCCCCCGCCTTCACCCAAACTTCCTACGCCCTGTTCGTCCGCGAGAACAAC AGCCCCGCCCTGCACATCGGCAGCATCAGCGCCACAGACAGAGACTCGGGCACCAACGCC CAGGTCAACTACTCGCTGCTGCCGTCCCAGGACCCGCACCTGCCCCTCGCCTCCCTGGTC TCCATCAACGCGGACAACGGCCACCTGTTTGCCCTCAGGTCGCTGGACTACGAGGCCCTG CAGGGGTTCCAGTTCCGCGTGGGCGCCACAGACCACGGCTCCCCGGCTTTGAGCAGCGAG GCGCTGGTGCGCGTGCTGGTGCTGGACGCCAACGACAACTCGCCCTTCGTGCTGTACCCG CTGCAGAACGGCTCCGCGCCCTGCACCGAGCTGGTGCCCTGGGCGGCCGAGCCGGGCTAC CTGGTGACCAAGGTGGTGGCGGTGGACGGTGACTCGGGCCAGAACGCCTGGCTGTCGTAC CAGCTGCTCAAGGCCACGGAGCCCGGGCTATTCGGCGTGTGGGCGCACAATGGCGAGGTG CGCACCGCCAGGCTGCTGAGCGAGCGCGACGCGGCCAAGCACAGGCTGGTGGTGCTGGTC AAGGACAATGGCGAGCCTCCGCGCTCGGCCACCGCCACGCTGCACGTGCTCCTGGTGGAC GGCTTCTCCCAGCCCTACCTGCCTCTCCCGGAGGCGGCCCCGGCCCAGGCCCAGGCCGAC TCGCTCACTGTCTACCTGGTGGTGGCGTTGGCCTCAGTGTCGTCGCTCTTCCTCTTCTCG GTGCTCCTGTTCGTGGCGGTGCGGCTGTGCAGGAGGAGCAGGGCGGCCCCGGTCGGTCGC TGCTCGGTGCCTGAGGGCCCCTTTCCAGGACATCTGGTGGACGTGAGTGGCACCGGGACC CTGTCCCAGAGCTACCACTATGAGGTGTGTGTGACTGGAGGCTCCAGGTCAAATAAGTTC AAATTTCTGAAACCAATTATCCCCAACTTCCTACCCCAGAGCACAGGTAGTGAAGTCGAA GAAAATCCCCCATTTCAGAATAATTTGGGTTTCGTTTAAACGAATTCGAGCTCGGTACCC GGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTGATCCGGCTGCTAACAAAGCCCG AAAGGAAGCTGAGTTGGCTGCTGCCACCGCTGAGCAATAACTAGCATAACCCCTTGGGGC CTCTAAACGGGTCTTGAGGGGTTTTTTGCTGAAAGGAGGAACTATATCCGGTTCGCTTGC TGTCCATAAAACCGCCCAGTCTAGCTATCGCCATGTAAGCCCACTGCAAGCTACCTGCTT TCTCTTTGCGCTTGCGTTTTCCCTTGTCCAGATAGCCCAGTAGCTGACATTCATCCGGGG TCAGCACCGTTTCTGCGGACTGGCTTTCTACGTGTTCCGCTTCCTTTAGCAGCCCTTGCG CCCTGAGTGCTTGCGGCAGCGTGAGCTTCAAAAGAATTGCCAGCTGGGGCGCCCTCTGGT AAGGTTGGGAAGCCCTGCAAAGTAAACTGGATGGCTTTCTTGCCGCCAAGGATCTGATGG CGCAGGGGATCAAGATCTGATCAAGAGACAGGATGACGGTCGTTTCGCATGCTTGAACAA GATGGATTGCACGCAGGTTCTCCGGCCGCTTGGGTGGAGAGGCTATTCGGCTATGACTGG GCACAACAGACAATCGGCTGCTCTGATGCCGCCGTGTTCCGGCTGTCAGCGCAGGGGCGC CCGGTTCTTTTTGTCAAGACCGACCTGTCCGGTGCCCTGAATGAACTGCAGGACGAGGCA GCGCGGCTATCGTGGCTGGCCACGACGGGCGTTCCTTGCGCAGCTGTGCTCGACGTTGTC ACTGAAGCGGGAAGGGACTGGCTGCTATTGGGCGAAGTGCCGGGGCAGGATCTCCTGTCA TCTCACCTTGCTCCTGCCGAGAAAGTATCCATCATGGCTGATGCAATGCGGCGGCTGCAT ACGCTTGATCCGGCTACCTGCCCATTCGACCACCAAGCGAAACATCGCATCGAGCGAGCA CGCACTCGGATGGAAGCCGGTCTTGTCGATCAGGATGATCTGGACGAAGAGCATCAGGGG CTCGCGCCAGCCGAACTGTTCGCCAGGCTCAAGGCGCGTATGCCGGATGGTGAGGATCTC GTCGTGACTCATGGCGATGCCTGCTTGCCGAATATCATGGTGGAAAATGGCCGCTTTTCT GGATTCATCGACTGTGGCCGGCTGGGTGTGGCGGACCGCTATCAGGACATAGCGTTGGCT ACCCGTGATATTGCTGAAGAGCTTGGCGGCGAATGGGCTGACCGCTTCCTCGTGCTTTAC GGTATCGCCGCTCCCGATTCGCAGCGCATCGCCTTCTATCGCCTTCTTGACGAGTTCTTC TGAGCGGGACTCTGGGGTTCGAAATGACCGACCAAGCGACGCCCAACCGGACTATAAAAG GATCTAGGTGAAGATCCTTTTTGATAATCTCATGACCAAAATCCCTTAACGTGAGTTTTC GTTCCACTGAGCGTCAGACCCCGTAGAAAAGATCAAAGGATCTTCTTGAAATCCTTTTTT TCTGCGCGTAATCTGCTGCTTGCAAACAAAAAAACCACCGCTACCAGCGGTGGTTTGTTT GCCGGATCAAGAGCTACCAACTCTTTTTCCGAAGGTAACTGGCTTCAGCAGAGCGCAGAT ACCAAATACTGTCCTTCTAGTGTAGCCGTAGTTAGGCCACCACTTCAAGAACTCTGTAGC ACCGCCTACATACCTCGCTCTGCTAATCCTGTTACCAGTGGCTGCTGCCAGTGGCGATAA GTCGTGTCTTACCGGGTTGGACTCAAGACGATAGTTACCGGATAAGGCGCAGCGGTCGGG CTGAACGGGGGGTTCGTGCACACAGCCCAGCTTGGAGCGAACGACCTACACCGAACTGAG ATACCTACAGCGTGAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAG GTATCCGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGAAA CGCCTGGTATCTTTATAGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTT GTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACG GTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTC TGTGGATAACCGTATTACCGCCTTTGAGTGAGCTGATACCGGAAATACAGGAACGCACGC TGGATGGCCCTTCGCTGGGATGGTGAAACCATGAAAAATGGCAGCTTCAGTGGATTAAGT GGGGGTAATGTGGCCTGTACCCTCTGGTTGCATAGGTATTCATACGGTTAAAATTTATCA GGCGCGATTGCGGCAGTTTTTCGGGTGGTTTGTTGCCATTTTTACCTGTCTGCTGCCGTG ATCGCGCTGAACGCGTTTTAGCGGTGCGTACAATTAAGGGATTATGGTAAATCCACTTAC TGTCTGCCCTCGTAGCCATCGAGATAAACCGCAGTACTCCGGCCACGATGCGTCCGGCGT AGAGGATCGAGATCTTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGAT AAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTC AGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAA CTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCT GTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACG TTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATC AAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACAAACTCTTTTGT TTATTTTTCTAAATACATTCAAATATGTATCCGCTCAT
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