SS18L1 ORF clone FXC00607

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Flexi ORF Clone FXC00607

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Clone info.

Species

human

Clone Name

pF1KSDA0693 Sequence (with vector) Restriction Map

Product ID

FXC00607

HaloTag Clone PID

FHC00607

ORF Sequence

DNA sequence (1188 bp)
Protein sequence (396 aa)

Linker Type

Flexi_RBS type

more Linker info

Vector Type

pF1KM Vector sequence

Restriction Map

Cloning Site

SgfI-PmeI

GenBank Accession

ORF sequence is derived from [AB383958]

Gene

KIAA0693

Symbol

SS18L1

Alias : CREST, LP2261, SMARCL2

Description

synovial sarcoma translocation gene on chromosome 18-like 1, transcript variant 1

Original Clone ID

hk03927

Features of the cloned ORF sequence

Description

Length: 1188 bp
Restriction map A Restriction map B
Genomic Structure

Features of the protein sequence

Description

Length: 396 aa
Result of homology search against CCDS protein database ( FASTA output, Multiple alignment) Entry Exp ID% symbol CCDS13491.1 7.9e-89 100.0 SS18L1 CCDS32807.1 1.6e-25 59.9 SS18 CCDS54183.1 1.3e-23 54.7 SS18 CCDS77168.1 5.1e-22 59.3 SS18 The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI) [ zoom out (x2) ]
Result of InterProScan Search method interpro_ID From To Entry Definition HMMPfam IPR007726 11 75 PF05030 SSXT
Result of homology search against disease genes in OMIM database(FASTA output, Multiple alignment) H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_945173 396 606472 100.0 100.0 XP_005260446 416 606472 99.2 98.7 XP_016883273 373 606472 100.0 94.2 XP_011527066 374 606472 100.0 94.2 XP_005260448 374 606472 100.0 94.2 Inquiries or Suggestions ? Send a message to flexiclone AT kazusagt.com

ORF DNA

Cloned ORF Nucleotide sequence for pF1KSDA0693 Download

>KIAA0693  1188 bp
ATGTCCGTGGCCTTCGCGTCTGCCCGGCCAAGAGGCAAAGGGGAGGTTACGCAGCAAACC
ATCCAGAAGATGCTGGACGAGAACCACCACCTGATCCAGTGCATCCTGGAGTACCAGAGC
AAGGGCAAGACGGCCGAGTGCACGCAGTACCAGCAGATCCTGCACCGGAACCTGGTATAC
CTGGCCACGATCGCAGACTCCAACCAGAACATGCAGTCCCTGCTTCCTGCCCCGCCCACG
CAGAACATGAACCTGGGCCCTGGAGCCCTGACTCAGAGCGGCTCCAGCCAGGGCCTGCAC
TCTCAGGGCAGCCTGAGTGACGCCATCAGCACGGGCCTGCCACCCTCCTCCCTCCTGCAG
GGCCAGATTGGCAACGGGCCGAGCCACGTGTCCATGCAGCAGACGGCGCCTAACACGCTG
CCCACCACCTCCATGAGCATCTCTGGGCCCGGCTACAGCCACGCGGGACCCGCCTCGCAG
GGCGTCCCCATGCAGGGGCAAGGCACCATCGGCAACTACGTGTCTCGGACCAACATCAAC
ATGCAGTCCAACCCAGTCTCCATGATGCAGCAGCAGGCGGCCACGTCGCACTACAGCTCG
GCGCAGGGCGGCAGCCAGCACTACCAGGGCCAGTCGTCCATCGCCATGATGGGGCAGGGC
AGCCAGGGGAGCAGCATGATGGGGCAGCGGCCCATGGCGCCCTACCGGCCCTCCCAGCAA
GGCTCTTCCCAGCAGTACCTGGGCCAGGAGGAGTACTATGGCGAGCAGTACAGCCACAGC
CAGGGCGCCGCGGAGCCCATGGGCCAGCAGTACTACCCCGACGGCCATGGCGATTACGCC
TACCAGCAGTCATCCTACACGGAGCAGAGCTACGACCGGTCCTTCGAGGAGTCCACGCAG
CACTACTATGAGGGGGGAAACTCCCAGTACAGCCAGCAGCAGGCCGGGTACCAGCAGGGT
GCCGCGCAGCAGCAGACGTACTCCCAGCAGCAGTACCCCAGCCAGCAGAGCTACCCCGGG
CAGCAGCAGGGCTACGGGTCTGCCCAGGGAGCCCCGTCACAGTACCCCGGCTACCAGCAA
GGCCAAGGCCAGCAGTACGGAAGCTACCGAGCACCGCAGACAGCGCCGTCTGCCCAGCAG
CAGCGGCCCTACGGCTATGAACAGGGCCAGTATGGAAATTACCAGCAG

ORF Protein

Cloned ORF protein sequence for pF1KSDA0693 Download

>KIAA0693  396 aa
MSVAFASARPRGKGEVTQQTIQKMLDENHHLIQCILEYQSKGKTAECTQYQQILHRNLVY
LATIADSNQNMQSLLPAPPTQNMNLGPGALTQSGSSQGLHSQGSLSDAISTGLPPSSLLQ
GQIGNGPSHVSMQQTAPNTLPTTSMSISGPGYSHAGPASQGVPMQGQGTIGNYVSRTNIN
MQSNPVSMMQQQAATSHYSSAQGGSQHYQGQSSIAMMGQGSQGSSMMGQRPMAPYRPSQQ
GSSQQYLGQEEYYGEQYSHSQGAAEPMGQQYYPDGHGDYAYQQSSYTEQSYDRSFEESTQ
HYYEGGNSQYSQQQAGYQQGAAQQQTYSQQQYPSQQSYPGQQQGYGSAQGAPSQYPGYQQ
GQGQQYGSYRAPQTAPSAQQQRPYGYEQGQYGNYQQ

ORF+Vector

Nucleotide Sequence (with vector) for pF1KSDA0693 Download

>pF1KSDA0693  4327 bp
GGATCTCGATCCCGCGAAATTAATACGACTCACTATAGGGGAATTGTGAGCGGATAACAA
TTCCCCACTAGTAATAATTTTCTTTAACTTTAGTAAGGAGCGATCGCTTTCGAAGGAGAT
AGAACCATGTCCGTGGCCTTCGCGTCTGCCCGGCCAAGAGGCAAAGGGGAGGTTACGCAG
CAAACCATCCAGAAGATGCTGGACGAGAACCACCACCTGATCCAGTGCATCCTGGAGTAC
CAGAGCAAGGGCAAGACGGCCGAGTGCACGCAGTACCAGCAGATCCTGCACCGGAACCTG
GTATACCTGGCCACGATCGCAGACTCCAACCAGAACATGCAGTCCCTGCTTCCTGCCCCG
CCCACGCAGAACATGAACCTGGGCCCTGGAGCCCTGACTCAGAGCGGCTCCAGCCAGGGC
CTGCACTCTCAGGGCAGCCTGAGTGACGCCATCAGCACGGGCCTGCCACCCTCCTCCCTC
CTGCAGGGCCAGATTGGCAACGGGCCGAGCCACGTGTCCATGCAGCAGACGGCGCCTAAC
ACGCTGCCCACCACCTCCATGAGCATCTCTGGGCCCGGCTACAGCCACGCGGGACCCGCC
TCGCAGGGCGTCCCCATGCAGGGGCAAGGCACCATCGGCAACTACGTGTCTCGGACCAAC
ATCAACATGCAGTCCAACCCAGTCTCCATGATGCAGCAGCAGGCGGCCACGTCGCACTAC
AGCTCGGCGCAGGGCGGCAGCCAGCACTACCAGGGCCAGTCGTCCATCGCCATGATGGGG
CAGGGCAGCCAGGGGAGCAGCATGATGGGGCAGCGGCCCATGGCGCCCTACCGGCCCTCC
CAGCAAGGCTCTTCCCAGCAGTACCTGGGCCAGGAGGAGTACTATGGCGAGCAGTACAGC
CACAGCCAGGGCGCCGCGGAGCCCATGGGCCAGCAGTACTACCCCGACGGCCATGGCGAT
TACGCCTACCAGCAGTCATCCTACACGGAGCAGAGCTACGACCGGTCCTTCGAGGAGTCC
ACGCAGCACTACTATGAGGGGGGAAACTCCCAGTACAGCCAGCAGCAGGCCGGGTACCAG
CAGGGTGCCGCGCAGCAGCAGACGTACTCCCAGCAGCAGTACCCCAGCCAGCAGAGCTAC
CCCGGGCAGCAGCAGGGCTACGGGTCTGCCCAGGGAGCCCCGTCACAGTACCCCGGCTAC
CAGCAAGGCCAAGGCCAGCAGTACGGAAGCTACCGAGCACCGCAGACAGCGCCGTCTGCC
CAGCAGCAGCGGCCCTACGGCTATGAACAGGGCCAGTATGGAAATTACCAGCAGTACGTA
GTTTAAACGAATTCGAGCTCGGTACCCGGGGATCCTCTAGAGTCGACCTGCAGGCATGCA
AGCTGATCCGGCTGCTAACAAAGCCCGAAAGGAAGCTGAGTTGGCTGCTGCCACCGCTGA
GCAATAACTAGCATAACCCCTTGGGGCCTCTAAACGGGTCTTGAGGGGTTTTTTGCTGAA
AGGAGGAACTATATCCGGTTCGCTTGCTGTCCATAAAACCGCCCAGTCTAGCTATCGCCA
TGTAAGCCCACTGCAAGCTACCTGCTTTCTCTTTGCGCTTGCGTTTTCCCTTGTCCAGAT
AGCCCAGTAGCTGACATTCATCCGGGGTCAGCACCGTTTCTGCGGACTGGCTTTCTACGT
GTTCCGCTTCCTTTAGCAGCCCTTGCGCCCTGAGTGCTTGCGGCAGCGTGAGCTTCAAAA
GAATTGCCAGCTGGGGCGCCCTCTGGTAAGGTTGGGAAGCCCTGCAAAGTAAACTGGATG
GCTTTCTTGCCGCCAAGGATCTGATGGCGCAGGGGATCAAGATCTGATCAAGAGACAGGA
TGACGGTCGTTTCGCATGCTTGAACAAGATGGATTGCACGCAGGTTCTCCGGCCGCTTGG
GTGGAGAGGCTATTCGGCTATGACTGGGCACAACAGACAATCGGCTGCTCTGATGCCGCC
GTGTTCCGGCTGTCAGCGCAGGGGCGCCCGGTTCTTTTTGTCAAGACCGACCTGTCCGGT
GCCCTGAATGAACTGCAGGACGAGGCAGCGCGGCTATCGTGGCTGGCCACGACGGGCGTT
CCTTGCGCAGCTGTGCTCGACGTTGTCACTGAAGCGGGAAGGGACTGGCTGCTATTGGGC
GAAGTGCCGGGGCAGGATCTCCTGTCATCTCACCTTGCTCCTGCCGAGAAAGTATCCATC
ATGGCTGATGCAATGCGGCGGCTGCATACGCTTGATCCGGCTACCTGCCCATTCGACCAC
CAAGCGAAACATCGCATCGAGCGAGCACGCACTCGGATGGAAGCCGGTCTTGTCGATCAG
GATGATCTGGACGAAGAGCATCAGGGGCTCGCGCCAGCCGAACTGTTCGCCAGGCTCAAG
GCGCGTATGCCGGATGGTGAGGATCTCGTCGTGACTCATGGCGATGCCTGCTTGCCGAAT
ATCATGGTGGAAAATGGCCGCTTTTCTGGATTCATCGACTGTGGCCGGCTGGGTGTGGCG
GACCGCTATCAGGACATAGCGTTGGCTACCCGTGATATTGCTGAAGAGCTTGGCGGCGAA
TGGGCTGACCGCTTCCTCGTGCTTTACGGTATCGCCGCTCCCGATTCGCAGCGCATCGCC
TTCTATCGCCTTCTTGACGAGTTCTTCTGAGCGGGACTCTGGGGTTCGCGAAATGACCGA
CCAAGCGACGCCCAACCGGTATCAGCTCACTCAAAGGCGGTAATACGGTTATCCACAGAA
TCAGGGGATAACGCAGGAAAGAACATGTGAGCAAAAGGCCAGCAAAAGGCCAGGAACCGT
AAAAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCTCCGCCCCCCTGACGAGCATCACAAA
AATCGACGCTCAAGTCAGAGGTGGCGAAACCCGACAGGACTATAAAGATACCAGGCGTTT
CCCCCTGGAAGCTCCCTCGTGCGCTCTCCTGTTCCGACCCTGCCGCTTACCGGATACCTG
TCCGCCTTTCTCCCTTCGGGAAGCGTGGCGCTTTCTCATAGCTCACGCTGTAGGTATCTC
AGTTCGGTGTAGGTCGTTCGCTCCAAGCTGGGCTGTGTGCACGAACCCCCCGTTCAGCCC
GACCGCTGCGCCTTATCCGGTAACTATCGTCTTGAGTCCAACCCGGTAAGACACGACTTA
TCGCCACTGGCAGCAGCCACTGGTAACAGGATTAGCAGAGCGAGGTATGTAGGCGGTGCT
ACAGAGTTCTTGAAGTGGTGGCCTAACTACGGCTACACTAGAAGGACAGTATTTGGTATC
TGCGCTCTGCTGAAGCCAGTTACCTTCGGAAAAAGAGTTGGTAGCTCTTGATCCGGCAAA
CAAACCACCGCTGGTAGCGGTGGTTTTTTTGTTTGCAAGCAGCAGATTACGCGCAGAAAA
AAAGGATTTCAAGAAGATCCTTTGATCTTTTCTACGGGGTCTGACGCTCAGTGGAACGAA
AACTCACGTTAAGGGATTTTGGTCATGAGATTATCAAAAAGGATCTTCACCTAGATCCTT
TTATAGTCCGGAAATACAGGAACGCACGCTGGATGGCCCTTCGCTGGGATGGTGAAACCA
TGAAAAATGGCAGCTTCAGTGGATTAAGTGGGGGTAATGTGGCCTGTACCCTCTGGTTGC
ATAGGTATTCATACGGTTAAAATTTATCAGGCGCGATTGCGGCAGTTTTTCGGGTGGTTT
GTTGCCATTTTTACCTGTCTGCTGCCGTGATCGCGCTGAACGCGTTTTAGCGGTGCGTAC
AATTAAGGGATTATGGTAAATCCACTTACTGTCTGCCCTCGTAGCCATCGAGATAAACCG
CAGTACTCCGGCCACGATGCGTCCGGCGTAGAGGATCGAGATCTTTTCAGCCTGATACAG
ATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCG
GTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGT
GTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCA
GTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAG
GACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGC
AGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGG
CCTTTTTGCGTTTCTACAAACTCTTTTGTTTATTTTTCTAAATACATTCAAATATGTATC
CGCTCAT