-
SpecieshumanProduct IDFXC00114Cloning SiteSgfI-PmeISymbolRBM19
Alias : Mrd1DescriptionRNA binding motif protein 19, transcript variant 2
Length: 2880 bp
Restriction map A
Restriction map B
Genomic Structure
-
Length: 960 aa
Result of homology search against CCDS protein database (
FASTA output,
Multiple alignment)
Entry Exp ID% symbol CCDS9172.1 1.3e-203 99.4 RBM19
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)
[ zoom out (x2) ]
Result of InterProScan
Search method interpro_ID From To Entry Definition HMMPfam IPR000504 4 72 PF00076 RNA recognition motif domain IPR000504 302 362 PF00076 RNA recognition motif domain IPR000504 404 473 PF00076 RNA recognition motif domain IPR000504 732 804 PF00076 RNA recognition motif domain IPR000504 834 904 PF00076 RNA recognition motif domain HMMSmart IPR000504 3 75 SM00360 RNA recognition motif domain IPR000504 295 365 SM00360 RNA recognition motif domain IPR003954 403 476 SM00361 RNA recognition motif domain IPR000504 403 476 SM00360 RNA recognition motif domain IPR000504 588 655 SM00360 RNA recognition motif domain IPR003954 731 807 SM00361 RNA recognition motif domain IPR000504 731 807 SM00360 RNA recognition motif domain IPR000504 833 908 SM00360 RNA recognition motif domain ProfileScan IPR000504 2 79 PS50102 RNA recognition motif domain IPR000504 294 369 PS50102 RNA recognition motif domain IPR000504 402 480 PS50102 RNA recognition motif domain IPR000504 587 659 PS50102 RNA recognition motif domain IPR000504 730 811 PS50102 RNA recognition motif domain IPR000504 832 912 PS50102 RNA recognition motif domain
Result of homology search against disease genes in OMIM database(FASTA output,
Multiple alignment)
H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_057280 960 616444 99.4 100.0 NP_001140171 960 616444 99.4 100.0 NP_001140170 960 616444 99.4 100.0 XP_016875770 936 616444 96.9 100.0 XP_016875769 936 616444 96.9 100.0 Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.comCloned ORF Nucleotide sequence for pF1KA0682 Download>KIAA0682 2880 bp ATGTCGCGACTGATCGTGAAGAATCTCCCGAATGGGATGAAGGAGGAGCGTTTCAGGCAG CTGTTTGCCGCCTTCGGCACGCTGACAGACTGCAGCCTGAAGTTCACCAAAGATGGCAAG TTCCGCAAGTTTGGTTTTATTGGCTTCAAGTCCGAGGAAGAGGCCCAGAAGGCACAGAAG CATTTCAACAAGAGCTTCATCGACACATCCCGGATCACAGTGGAGTTCTGCAAGTCATTC GGGGACCCGGCCAAACCCAGAGCCTGGAGCAAACATGCCCAGAAACCAAGCCAGCCCAAG CAGCCTCCAAAAGACTCTACTACTCCAGAAATTAAGAAAGATGAGAAGAAGAAAAAGGTG GCAGGTCAACTGGAGAAGCTGAAGGAGGATACAGAGTTCCAGGAGTTTCTGTCAGTTCAT CGGAGGCGGGCGCAGGCAGCCACTTGGGCGAATGATGGCCTGGATGCTGAGCCCTCGAAA GGGAAGAGCAAGCCGGCCAGTGACTACCTGAACTTCGACTCCGATTCTGGGCAGGAGAGT GAGGAGGAGGGAGCCGGGGAGGACCTGGAAGAAGAGGCAAGCCTCGAACCAAAGGCAGCT GTGCAGAAGGAGCTGTCGGACATGGATTACCTGAAATCCAAGATGGTGAAGGCTGGGTCG TCCTCTTCCTCGGAGGAAGAGGAAAGTGAAGATGAAGCCGTGCACTGTGATGAAGGGAGT GAGGCCGAGGAAGAGGATTCCTCCGCCACCCCAGTCCTGCAGGAAAGAGACAGCAGGGGT GCAGGCCAAGAGCAAGGGATGCCAGCTGGGAAAAAGAGACCACCGGAGGCCAGAGCCGAG ACAGAGAAACCAGCAAACCAGAAGGAACCCACCACCTGCCACACCGTGAAGCTGCGGGGA GCCCCGTTCAATGTCACAGAGAAAAATGTTATGGAATTCCTGGCACCCCTGAAACCAGTG GCCATTCGAATTGTGAGAAACGCTCATGGGAATAAAACAGGATACATCTTTGTGGATTTC AGCAATGAAGAGGAAGTGAAGCAAGCTCTGAAATGCAACCGGGAGTACATGGGTGGGCGC TACATCGAGGTGTTCAGGGAAAAGAACGTCCCCACCACCAAGGGTGCACCAAAGAATACC ACCAAATCCTGGCAAGGCCGGATACTCGGGGAGAACGAAGAGGAGGAGGACCTGGCCGAA TCCGGAAGGCTCTTTGTACGGAACCTGCCCTACACCAGCACCGAGGAGGATCTGGAGAAG CTCTTCTCCAAATACGGTCCCCTGTCTGAGCTCCACTACCCCATCGACAGCCTGACCAAG AAACCCAAGGGTTTTGCATTCATCACCTTCATGTTCCCTGAGCACGCTGTGAAGGCCTAC TCGGAGGTGGACGGGCAGGTATTCCAGGGCAGGATGCTCCACGTGTTACCATCTACCATC AAGAAGGAAGCCAGCGAGGATGCCAGTGCCCTGGGATCGTCGTCCTACAAGAAGAAGAAG GAGGCCCAGGACAAAGCCAACAGTGCCAGCTCTCACAACTGGAACACACTATTCATGGGG CCGAATGCCGTGGCCGATGCCATCGCACAGAAGTACAACGCCACCAAAAGTCAAGTGTTT GACCACGAGACCAAGGGCAGCGTGGCCGTGCGCGTGGCTCTGGGGGAAACCCAGCTCGTC CAGGAAGTGCGGCGTTTTCTCATAGACAACGGGGTCAGCCTGGATTCCTTCAGCCAGGCT GCAGCAGAGCGAAGCAAGACTGTGATTCTGGTCAAGAACCTCCCGGCAGGCACCCTGGCG GCCGAGCTGCAGGAGACCTTCGGCCGTTTTGGCAGCCTGGGCCGCGTGCTGCTGCCAGAG GGCGGAACCACTGCCATCGTGGAGTTCCTGGAGCCCCTGGAGGCCCGCAAGGCCTTCAGG CATCTGGCCTATTCCAAGTTCCATCATGTCCCCCTCTATCTGGAGTGGGCTCCAGTTGGC GTCTTCTCCAGCGCAGCCCCACAGAAGAAAAAGCTCCAAGACACACCTTCAGAACCCATG GAAAAGGACCCAGCAGAGCCAGAAACAGTGCCTGATGGCGAAACCCCAGAAGATGAAAAT CCAACAGAGGAAGGAGCAGACAACTCTTCAGCAAAGATGGAAGAGGAGGAGGAGGAAGAG GAAGAAGAAGAAGAGAGCCTCCCAGGATGTACTCTGTTTATTAAGAATCTCAATTTTGAC ACAACAGAAGAGAAGCTGAAGGAAGTGTTTTCAAAAGTGGGGACAGTGAAGAGCTGCTCC ATCTCCAAGAAGAAGAACAAAGCAGGAGTGCTCCTTTCCATGGGGTTTGGATTTGTGGAA TACAGGAAGCCGGAGCAAGCCCAGAAAGCTCTCAAGCAGCTCCAGGGTCACGTCGTGGAC GGCCACAAGCTGGAAGTGAGGATCTCGGAACGAGCCACTAAGCCAGCCGTGACATTGGCT CGGAAGAAACAAGTTCCCAGAAAGCAGACCACCTCCAAGATCCTGGTGCGGAACATCCCC TTCCAGGCCCACAGCCGGGAGATCCGAGAGCTCTTCAGCACCTTTGGGGAGTTGAAGACG GTCCGCCTGCCAAAGAAGATGACTGGGACAGGCACACACAGAGGCTTCGGCTTTGTGGAC TTCCTCACCAAGCAGGATGCGAAGAGAGCCTTCAACGCCCTGTGTCACAGCACCCACTTG TACGGGCGGAGGCTGGTGCTGGAGTGGGCCGACTCCGAGGTGACCCTGCAGGCCCTGCGG CGGAAGACGGCCGCTCACTTTCACGAGCCCCCGAAGAAAAAGCGGTCTGTGGTGTTGGAC GAGATCCTGGAGCAGCTGGAAGGCAGTGACAGCGACAGCGAGGAGCAGACCCTTCAGCTG
Cloned ORF protein sequence for pF1KA0682 Download>KIAA0682 960 aa MSRLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQKAQK HFNKSFIDTSRITVEFCKSFGDPAKPRAWSKHAQKPSQPKQPPKDSTTPEIKKDEKKKKV AGQLEKLKEDTEFQEFLSVHRRRAQAATWANDGLDAEPSKGKSKPASDYLNFDSDSGQES EEEGAGEDLEEEASLEPKAAVQKELSDMDYLKSKMVKAGSSSSSEEEESEDEAVHCDEGS EAEEEDSSATPVLQERDSRGAGQEQGMPAGKKRPPEARAETEKPANQKEPTTCHTVKLRG APFNVTEKNVMEFLAPLKPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCNREYMGGR YIEVFREKNVPTTKGAPKNTTKSWQGRILGENEEEEDLAESGRLFVRNLPYTSTEEDLEK LFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKAYSEVDGQVFQGRMLHVLPSTI KKEASEDASALGSSSYKKKKEAQDKANSASSHNWNTLFMGPNAVADAIAQKYNATKSQVF DHETKGSVAVRVALGETQLVQEVRRFLIDNGVSLDSFSQAAAERSKTVILVKNLPAGTLA AELQETFGRFGSLGRVLLPEGGTTAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPVG VFSSAAPQKKKLQDTPSEPMEKDPAEPETVPDGETPEDENPTEEGADNSSAKMEEEEEEE EEEEESLPGCTLFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVE YRKPEQAQKALKQLQGHVVDGHKLEVRISERATKPAVTLARKKQVPRKQTTSKILVRNIP FQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRAFNALCHSTHL YGRRLVLEWADSEVTLQALRRKTAAHFHEPPKKKRSVVLDEILEQLEGSDSDSEEQTLQL
Nucleotide Sequence (with vector) for pF1KA0682 Download>pF1KA0682 5993 bp GGATCTCGATCCCGCGAAATTAATACGACTCACTATAGGGGAATTGTGAGCGGATAACAA TTCCCCACTAGTAATAATTTTCTTTAACTTTAGTAAGGAGCGATCGCCATGTCGCGACTG ATCGTGAAGAATCTCCCGAATGGGATGAAGGAGGAGCGTTTCAGGCAGCTGTTTGCCGCC TTCGGCACGCTGACAGACTGCAGCCTGAAGTTCACCAAAGATGGCAAGTTCCGCAAGTTT GGTTTTATTGGCTTCAAGTCCGAGGAAGAGGCCCAGAAGGCACAGAAGCATTTCAACAAG AGCTTCATCGACACATCCCGGATCACAGTGGAGTTCTGCAAGTCATTCGGGGACCCGGCC AAACCCAGAGCCTGGAGCAAACATGCCCAGAAACCAAGCCAGCCCAAGCAGCCTCCAAAA GACTCTACTACTCCAGAAATTAAGAAAGATGAGAAGAAGAAAAAGGTGGCAGGTCAACTG GAGAAGCTGAAGGAGGATACAGAGTTCCAGGAGTTTCTGTCAGTTCATCGGAGGCGGGCG CAGGCAGCCACTTGGGCGAATGATGGCCTGGATGCTGAGCCCTCGAAAGGGAAGAGCAAG CCGGCCAGTGACTACCTGAACTTCGACTCCGATTCTGGGCAGGAGAGTGAGGAGGAGGGA GCCGGGGAGGACCTGGAAGAAGAGGCAAGCCTCGAACCAAAGGCAGCTGTGCAGAAGGAG CTGTCGGACATGGATTACCTGAAATCCAAGATGGTGAAGGCTGGGTCGTCCTCTTCCTCG GAGGAAGAGGAAAGTGAAGATGAAGCCGTGCACTGTGATGAAGGGAGTGAGGCCGAGGAA GAGGATTCCTCCGCCACCCCAGTCCTGCAGGAAAGAGACAGCAGGGGTGCAGGCCAAGAG CAAGGGATGCCAGCTGGGAAAAAGAGACCACCGGAGGCCAGAGCCGAGACAGAGAAACCA GCAAACCAGAAGGAACCCACCACCTGCCACACCGTGAAGCTGCGGGGAGCCCCGTTCAAT GTCACAGAGAAAAATGTTATGGAATTCCTGGCACCCCTGAAACCAGTGGCCATTCGAATT GTGAGAAACGCTCATGGGAATAAAACAGGATACATCTTTGTGGATTTCAGCAATGAAGAG GAAGTGAAGCAAGCTCTGAAATGCAACCGGGAGTACATGGGTGGGCGCTACATCGAGGTG TTCAGGGAAAAGAACGTCCCCACCACCAAGGGTGCACCAAAGAATACCACCAAATCCTGG CAAGGCCGGATACTCGGGGAGAACGAAGAGGAGGAGGACCTGGCCGAATCCGGAAGGCTC TTTGTACGGAACCTGCCCTACACCAGCACCGAGGAGGATCTGGAGAAGCTCTTCTCCAAA TACGGTCCCCTGTCTGAGCTCCACTACCCCATCGACAGCCTGACCAAGAAACCCAAGGGT TTTGCATTCATCACCTTCATGTTCCCTGAGCACGCTGTGAAGGCCTACTCGGAGGTGGAC GGGCAGGTATTCCAGGGCAGGATGCTCCACGTGTTACCATCTACCATCAAGAAGGAAGCC AGCGAGGATGCCAGTGCCCTGGGATCGTCGTCCTACAAGAAGAAGAAGGAGGCCCAGGAC AAAGCCAACAGTGCCAGCTCTCACAACTGGAACACACTATTCATGGGGCCGAATGCCGTG GCCGATGCCATCGCACAGAAGTACAACGCCACCAAAAGTCAAGTGTTTGACCACGAGACC AAGGGCAGCGTGGCCGTGCGCGTGGCTCTGGGGGAAACCCAGCTCGTCCAGGAAGTGCGG CGTTTTCTCATAGACAACGGGGTCAGCCTGGATTCCTTCAGCCAGGCTGCAGCAGAGCGA AGCAAGACTGTGATTCTGGTCAAGAACCTCCCGGCAGGCACCCTGGCGGCCGAGCTGCAG GAGACCTTCGGCCGTTTTGGCAGCCTGGGCCGCGTGCTGCTGCCAGAGGGCGGAACCACT GCCATCGTGGAGTTCCTGGAGCCCCTGGAGGCCCGCAAGGCCTTCAGGCATCTGGCCTAT TCCAAGTTCCATCATGTCCCCCTCTATCTGGAGTGGGCTCCAGTTGGCGTCTTCTCCAGC GCAGCCCCACAGAAGAAAAAGCTCCAAGACACACCTTCAGAACCCATGGAAAAGGACCCA GCAGAGCCAGAAACAGTGCCTGATGGCGAAACCCCAGAAGATGAAAATCCAACAGAGGAA GGAGCAGACAACTCTTCAGCAAAGATGGAAGAGGAGGAGGAGGAAGAGGAAGAAGAAGAA GAGAGCCTCCCAGGATGTACTCTGTTTATTAAGAATCTCAATTTTGACACAACAGAAGAG AAGCTGAAGGAAGTGTTTTCAAAAGTGGGGACAGTGAAGAGCTGCTCCATCTCCAAGAAG AAGAACAAAGCAGGAGTGCTCCTTTCCATGGGGTTTGGATTTGTGGAATACAGGAAGCCG GAGCAAGCCCAGAAAGCTCTCAAGCAGCTCCAGGGTCACGTCGTGGACGGCCACAAGCTG GAAGTGAGGATCTCGGAACGAGCCACTAAGCCAGCCGTGACATTGGCTCGGAAGAAACAA GTTCCCAGAAAGCAGACCACCTCCAAGATCCTGGTGCGGAACATCCCCTTCCAGGCCCAC AGCCGGGAGATCCGAGAGCTCTTCAGCACCTTTGGGGAGTTGAAGACGGTCCGCCTGCCA AAGAAGATGACTGGGACAGGCACACACAGAGGCTTCGGCTTTGTGGACTTCCTCACCAAG CAGGATGCGAAGAGAGCCTTCAACGCCCTGTGTCACAGCACCCACTTGTACGGGCGGAGG CTGGTGCTGGAGTGGGCCGACTCCGAGGTGACCCTGCAGGCCCTGCGGCGGAAGACGGCC GCTCACTTTCACGAGCCCCCGAAGAAAAAGCGGTCTGTGGTGTTGGACGAGATCCTGGAG CAGCTGGAAGGCAGTGACAGCGACAGCGAGGAGCAGACCCTTCAGCTGGTTTAAACGAAT TCGAGCTCGGTACCCGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTGATCCGGC TGCTAACAAAGCCCGAAAGGAAGCTGAGTTGGCTGCTGCCACCGCTGAGCAATAACTAGC ATAACCCCTTGGGGCCTCTAAACGGGTCTTGAGGGGTTTTTTGCTGAAAGGAGGAACTAT ATCCGGTTCGCTTGCTGTCCATAAAACCGCCCAGTCTAGCTATCGCCATGTAAGCCCACT GCAAGCTACCTGCTTTCTCTTTGCGCTTGCGTTTTCCCTTGTCCAGATAGCCCAGTAGCT GACATTCATCCGGGGTCAGCACCGTTTCTGCGGACTGGCTTTCTACGTGTTCCGCTTCCT TTAGCAGCCCTTGCGCCCTGAGTGCTTGCGGCAGCGTGAGCTTCAAAAGAATTGCCAGCT GGGGCGCCCTCTGGTAAGGTTGGGAAGCCCTGCAAAGTAAACTGGATGGCTTTCTTGCCG CCAAGGATCTGATGGCGCAGGGGATCAAGATCTGATCAAGAGACAGGATGACGGTCGTTT CGCATGCTTGAACAAGATGGATTGCACGCAGGTTCTCCGGCCGCTTGGGTGGAGAGGCTA TTCGGCTATGACTGGGCACAACAGACAATCGGCTGCTCTGATGCCGCCGTGTTCCGGCTG TCAGCGCAGGGGCGCCCGGTTCTTTTTGTCAAGACCGACCTGTCCGGTGCCCTGAATGAA CTGCAGGACGAGGCAGCGCGGCTATCGTGGCTGGCCACGACGGGCGTTCCTTGCGCAGCT GTGCTCGACGTTGTCACTGAAGCGGGAAGGGACTGGCTGCTATTGGGCGAAGTGCCGGGG CAGGATCTCCTGTCATCTCACCTTGCTCCTGCCGAGAAAGTATCCATCATGGCTGATGCA ATGCGGCGGCTGCATACGCTTGATCCGGCTACCTGCCCATTCGACCACCAAGCGAAACAT CGCATCGAGCGAGCACGCACTCGGATGGAAGCCGGTCTTGTCGATCAGGATGATCTGGAC GAAGAGCATCAGGGGCTCGCGCCAGCCGAACTGTTCGCCAGGCTCAAGGCGCGTATGCCG GATGGTGAGGATCTCGTCGTGACTCATGGCGATGCCTGCTTGCCGAATATCATGGTGGAA AATGGCCGCTTTTCTGGATTCATCGACTGTGGCCGGCTGGGTGTGGCGGACCGCTATCAG GACATAGCGTTGGCTACCCGTGATATTGCTGAAGAGCTTGGCGGCGAATGGGCTGACCGC TTCCTCGTGCTTTACGGTATCGCCGCTCCCGATTCGCAGCGCATCGCCTTCTATCGCCTT CTTGACGAGTTCTTCTGAGCGGGACTCTGGGGTTCGAAATGACCGACCAAGCGACGCCCA ACCGGTATCAGCTCACTCAAAGGCGGTAATACGGTTATCCACAGAATCAGGGGATAACGC AGGAAAGAACATGTGAGCAAAAGGCCAGCAAAAGGCCAGGAACCGTAAAAAGGCCGCGTT GCTGGCGTTTTTCCATAGGCTCCGCCCCCCTGACGAGCATCACAAAAATCGACGCTCAAG TCAGAGGTGGCGAAACCCGACAGGACTATAAAGATACCAGGCGTTTCCCCCTGGAAGCTC CCTCGTGCGCTCTCCTGTTCCGACCCTGCCGCTTACCGGATACCTGTCCGCCTTTCTCCC TTCGGGAAGCGTGGCGCTTTCTCATAGCTCACGCTGTAGGTATCTCAGTTCGGTGTAGGT CGTTCGCTCCAAGCTGGGCTGTGTGCACGAACCCCCCGTTCAGCCCGACCGCTGCGCCTT ATCCGGTAACTATCGTCTTGAGTCCAACCCGGTAAGACACGACTTATCGCCACTGGCAGC AGCCACTGGTAACAGGATTAGCAGAGCGAGGTATGTAGGCGGTGCTACAGAGTTCTTGAA GTGGTGGCCTAACTACGGCTACACTAGAAGGACAGTATTTGGTATCTGCGCTCTGCTGAA GCCAGTTACCTTCGGAAAAAGAGTTGGTAGCTCTTGATCCGGCAAACAAACCACCGCTGG TAGCGGTGGTTTTTTTGTTTGCAAGCAGCAGATTACGCGCAGAAAAAAAGGATTTCAAGA AGATCCTTTGATCTTTTCTACGGGGTCTGACGCTCAGTGGAACGAAAACTCACGTTAAGG GATTTTGGTCATGAGATTATCAAAAAGGATCTTCACCTAGATCCTTTTATAGTCCGGAAA TACAGGAACGCACGCTGGATGGCCCTTCGCTGGGATGGTGAAACCATGAAAAATGGCAGC TTCAGTGGATTAAGTGGGGGTAATGTGGCCTGTACCCTCTGGTTGCATAGGTATTCATAC GGTTAAAATTTATCAGGCGCGATTGCGGCAGTTTTTCGGGTGGTTTGTTGCCATTTTTAC CTGTCTGCTGCCGTGATCGCGCTGAACGCGTTTTAGCGGTGCGTACAATTAAGGGATTAT GGTAAATCCACTTACTGTCTGCCCTCGTAGCCATCGAGATAAACCGCAGTACTCCGGCCA CGATGCGTCCGGCGTAGAGGATCGAGATCTTTTCAGCCTGATACAGATTAAATCAGAACG CAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGA CCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCA TGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGG CCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGG GAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCAT AAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTC TACAAACTCTTTTGTTTATTTTTCTAAATACATTCAAATATGTATCCGCTCAT
more Linker info
