SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >MYH9.P1 (Universal genetic code) : 201 aa
 vs  library
 searching sp:Q01042:IE68_HSVSA library

    407 residues in     1 sequences
The best scores are:                              s-w
sp|Q01042|IE68_HSVSA                               (407) 247

>>sp|Q01042|IE68_HSVSA                               (407 aa)
Smith-Waterman score: 247;   31.250% identity in 208 aa overlap

sp|Q01 MAPRRRKAKRRRHTLRSECKDKCKCHVQCYVSPRKRRRKLKPQGDDDINTTHQQQAALTE
               10        20        30        40        50        60

                                                   10        20    
MYH9.P                                     MKKGAKRKGVSKAGRKAAVAETQN
                                               :..: . .  ..:  :: . 
sp|Q01 EQRREEVEEEGEERERRGEEEREGEGGEEGEGREEAEEEEAEEKEAEE--EEAEEAEEEA
               70        80        90       100         110        

           30        40        50        60          70        80  
MYH9.P DEVIEETTKTTQEESQQHEEEVVDEVKENGEEEEAK-GDQE-EEEDAKPDSLEEDEENQE
       .:  ::. ..  :: . .:::. .:  :..:::::. ...: :::.:. .. :: :: .:
sp|Q01 EE--EEAEEAEAEEEEAEEEEAEEEEAEEAEEEEAEEAEEEAEEEEAEEEAEEEAEEAEE
      120         130       140       150       160       170      

             90       100        110       120       130       140 
MYH9.P DEVKAEEVKEEVEKKPVARRGGKR-KRATKKDTEIKDEKKPVPKAKKPRAAKVKEEPVYF
        : .:::  ::.:.   :... .. ..: ..  : ..: . . .:.. . :. . : .  
sp|Q01 AEEEAEEEAEEAEEAEEAEEAEEEAEEAEEEAEEAEEEAEEAEEAEEAEEAEEEAEEAEE
        180       190       200       210       220       230      

                150         160       170       180            190 
MYH9.P EEKR---SLEDL--WKVAFPVGTEEALEEGGKLYGKKVYVFGCT--EPQL---VPYKGAN
       ::..   :   :  .::   :: . . . :: .   :.    :   .::    .: ::  
sp|Q01 EEEEAGPSTPRLPHYKV---VGQKPSTQPGG-V--PKL----CLKMQPQHRSRLP-KG--
        240       250          260              270       280      

               200                                                 
MYH9.P KIVH--VPAVVV                                                
       :  :  ::                                                    
sp|Q01 KQSHDKVPKKYQARNKFFSQAAPSVLDLSPKSWCWVVDFWGPTDALYRLSRSLSFPGAVS
           290       300       310       320       330       340   

sp|Q01 SGIQTFPKGPHATGPWVYFITVYCRTFQTAKEVIKAQKKYEKKYPRSAKLKASLGKFSKS
           350       360       370       380       390       400   

sp|Q01 LPIE
           

Library scan:  0:00:00  total CPU time:  0:00:00