SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >MYH9.12 (Universal genetic code) : 336 aa
 vs  library
 searching sp:P27788:FER3_MAIZE library

    152 residues in     1 sequences
The best scores are:                              s-w
sp|P27788|FER3_MAIZE                               (152) 413

>>sp|P27788|FER3_MAIZE                               (152 aa)
Smith-Waterman score: 413;   47.287% identity in 129 aa overlap

               10        20        30        40        50        60
MYH9.1 MCICNNVGDEDITRSRGRDRGSEYTEECGVGERCSAKGSHEAELKKNMERGVSYYLWIPF

               70        80        90       100       110       120
MYH9.1 KFIHQTFGSLLLKLLGLRSPSDHSFPEEKEEPSSIETSTRSLNVMRKGIRKQPVSSGKRG

              130       140       150       160       170       180
MYH9.1 GVNDYDIYTNSPCRAFNTLSDTLATQTLKELQNRYEEIGNHHEGVEDAIESEPLVNREIG

              190       200       210       220        230         
MYH9.1 EASRRVTRRRKERFLSMNPLWRIGFQEIRDWAQLTTRLNNTTYF-GLSSSRGNFGKVFAK
                                  ... ..:.  ....:   .:..:. ..  : : 
sp|P27   MSTSTFATSCTLLGNVRTTQASQTAVKSPSSLSF-FSQVTKVPSLKTSK-KLD-VSAM
                 10        20        30         40         50      

     240       250       260       270       280       290         
MYH9.1 ESRKVKLISPEGEEQEIEGNEDCCILESAENAGLELPYSCRSGTCGTCCGKLVSGKVDQS
          ::::..:::::.:... .:  ::..::.::.:::::::.:.:.:: ::. ::.::::
sp|P27 AVYKVKLVGPEGEEHEFDAPDDAYILDAAETAGVELPYSCRAGACSTCAGKIESGSVDQS
          60        70        80        90       100       110     

     300       310       320       330      
MYH9.1 LGSFLEEEQIQKGYILTCIALPLEDCVVYTHKQSDLI
        ::::.. : ..::.:::.. :  :::..:::..:: 
sp|P27 DGSFLDDGQQEEGYVLTCVSYPKSDCVIHTHKEGDLY
         120       130       140       150  

Library scan:  0:00:00  total CPU time:  0:00:00