SSEARCH searches a sequence database
using the Smith-Waterman algorithm
version 2.0u54, July. 1996
Please cite:
T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197;
W.R. Pearson (1991) Genomics 11:635-650
>MXH1.14 (Universal genetic code) : 459 aa
vs library
searching atfca58 library
1942 residues in 1 sequences
The best scores are: s-w
ATFCA58, 1942 bases, 25AD checksum. (1942) 406
>>ATFCA58, 1942 bases, 25AD checksum. (1942 aa)
Smith-Waterman score: 406; 25.668% identity in 561 aa overlap
ATFCA5 MVSELMERRSMELYTVPQLNISNCVTVTLTQQNYILWKSQFESFLSGQGLLGFVTGSISA
10 20 30 40 50 60
ATFCA5 PSPTIPVPDINGVTTDRPNPEFDVWFKTDKVVKSWLLGSFAEDILSVVVNYVTAHELQRR
70 80 90 100 110 120
10 20 30
MXH1.1 MVSDLIEVRSMAPYTIPPSSQYFQ----LFHHYSLPTKLH
: : : : .: . . : : ..: : :
ATFCA5 LQTLEKKDKPMQVYLKELQTIYEQLASVGS--P--VPEKMKIFAALNGLGREYE-PIKT-
130 140 150 160 170
40 50 60 70 80
MXH1.1 SLEGRA----SSR---IFYLVKGCVTFEEQIQEFYTWHQPDQVVKSWL-LGSF-AEDILS
:.:: . . :. ..: .....: :. .. : :. : ... :....
ATFCA5 SIEGSIDIPPTPKLDEIMPRLNG---YDDRLQA-YAANS-D--VSPHLAFNTVQANSVFY
180 190 200 210 220
90 100 110 120 130
MXH1.1 VVV-----NC-FA-SHQSENSSVVCQICGKAGHHALKCWHRFDNNYQYEDLPMTL-----
. : :. :. .: . :::::: :::::.:::::::.:: . ::..:
ATFCA5 TNRGRGQGNRRFGGSRGQERPT--CQICGKHGHHALNCWHRFDNSYQLDVLPQALPATQI
230 240 250 260 270 280
140 150
MXH1.1 -------GK-----------I---P--LKEV--LACHD---IAK-SLL--------SV--
:. : : :... : : ... ..: :.
ATFCA5 TDITDHSGSEWVTDSAATAHITNSPRHLQQTKSYAGSDSVMVGNGNFLPITHTGSTSIGS
290 300 310 320 330 340
160 170 180 190 200 210
MXH1.1 SKLTSDYPCSIEFDVDSVRINDKATKKLLIMGRTLEEATV-SQIRVIRRIL-ETFCVASG
...:.:::: .::: : ::. :: :::::..: . . : .. ... .. . ::..
ATFCA5 TSVTKDYPCIFEFDCDEVRVRDKETKKLLLQGSNRDGLYVLDEPKLL--VFYSSRQVAAS
350 360 370 380 390 400
220 230 240 250 260
MXH1.1 QKVI---LGYSADGAFT-VTSAYEMLM-ENSE--CRTDMSS-FFARLW---QVMAPERVR
..: ::. .. ..:. .:. ..:. :.. .: . :: ::. . :
ATFCA5 DEVWHRRLGHPNPHVLQQLSSTKSILINKHSKAICEACQSERIHCDLWGPSPVMSVQGFR
410 420 430 440 450 460
270 280 290 300
MXH1.1 ---TFL-------WLVTQQV------IMTNVER-VRGHIGES--SVCQVCKGGDEPILHV
:. :. .. :... . :.... .: :. : :.:: : .:
ATFCA5 YYVIFIDNYSRYCWFYPLKLKSDFYTIFAKFQALVQNQL-QSKISIFQ-CHGGGEFTSKV
470 480 490 500 510 520
310 320 330 340 350
MXH1.1 RRDCPSIAGIWRMMQTSHLLMYWLMDFLT-NFLKNLL-NEGL-----P-ELL-RVEPSKE
: : .: :. : : :::.::: . .: : ::: . .:. .
ATFCA5 ----P---------Q-KH----WVEAFYTTNFLSNLLPHTALTDAKSPFELLNKKKPDYQ
530 540 550 560
360 370 380 390 400 410
MXH1.1 SESSINLGSF-MLEISNPPNEEEACKTSLAEISKGIKEKFKGNKLSLFDVIKLALIAKED
. .. . : :. . .. . : :: . : .::.:: . :. . . :...
ATFCA5 ALRIFGCACFPTLR-DYAQHKFDP-K-SLKCVFLGYNEKYKGYR-CLLPTTGRVYISRH-
570 580 590 600 610
420 430 440 450
MXH1.1 CLLEILDP---PFNPENASRHKAPS--MPTICT-SSS--PPITLSLLYRLICM
. :.: ::. .. : :. : . . ..: : : :
ATFCA5 -V--IFDEHSFPFS--DTYMHLQPTGVTPLLSAWQQSFMPQTTASSTASATATSPFNAAE
620 630 640 650 660 670
ATFCA5 IQVSPVITSNNNTGASVLENGSSQLPIQNSSVLSTVASEESSECTESINLLPIGNSSSSL
680 690 700 710 720 730
ATFCA5 ANRTDNADTSPLQEAATETNSSTVQEAAESTTSSTMQEPASNQSTHPMITRSKKGITKPN
740 750 760 770 780 790
ATFCA5 PRYGLLTHKVKYAEPKTVTEALKHPGWTAAMHEEYDNCTEAQTWSLVPYTSDMNVLGSKW
800 810 820 830 840 850
ATFCA5 VFRTKLNADGSLDKLKARLVAKGFDQEEGIDYLETYSHVVRSATVRMVLHVATVMDWEVK
860 870 880 890 900 910
ATFCA5 QMDVKNAFLHGDLTETVYMLQPAGFVNKEKPTHVCHLHKALYGLKQAPRAWFDKFSNYLL
920 930 940 950 960 970
ATFCA5 EFGFNCSIKDPSLFIYLKGNDLILLLLYVDDMVLTENEEAYGNCKLCRGNLPKIYYYCLI
980 990 1000 1010 1020 1030
ATFCA5 CDFSIDLICAKKEVMEIIEGPKAHEHPLFLLPKMTMFTCHLCGLQDDRFPYACNLCNLSF
1040 1050 1060 1070 1080 1090
ATFCA5 HKDCAESTPEMKYSCHPKHILKRLTRVPSVDINCAKNPLPSTIVHLKAHEHLLTLMPQRN
1100 1110 1120 1130 1140 1150
ATFCA5 FVCDACGMDDDPNPYIVLYIKIVPQALPATQITDITDHSGSEWVTDSAATAHITNSPRHL
1160 1170 1180 1190 1200 1210
ATFCA5 QQTKSYAGSDSVMVGNGNFLPITHTGSTSIGSTSVTKDYPCIFEFDCDEVRVRDKETKKL
1220 1230 1240 1250 1260 1270
ATFCA5 LLQGSNRDGLYVLDEPKLLVFYSSRQVAASDEVWHRRLGHPNPHVLQQLSSTKSILINKH
1280 1290 1300 1310 1320 1330
ATFCA5 SKAICEACQSERIHCDLWGPSPVMSVQGFRYYVIFIDNYSRYCWFYPLKLKSDFYTIFAK
1340 1350 1360 1370 1380 1390
ATFCA5 FQALVQNQLQSKISIFQCHGGGEFTSKVPQKHWVEAFYTTNFLSNLLPHTALTDAKSPFE
1400 1410 1420 1430 1440 1450
ATFCA5 LLNKKKPDYQALRIFGCACFPTLRDYAQHKFDPKSLKCVFLGYNEKYKGYRCLLPTTGRV
1460 1470 1480 1490 1500 1510
ATFCA5 YISRHVIFDEHSFPFSDTYMHLQPTGVTPLLSAWQQSFMPQTTASSTASATATSPFNAAE
1520 1530 1540 1550 1560 1570
ATFCA5 IQVSPVITSNNNTGASVLENGSSQLPIQNSSVLSTVASEESSECTESINLLPIGNSSSSL
1580 1590 1600 1610 1620 1630
ATFCA5 ANRTDNADTSPLQEAATETNSSTVQEAAESTTSSTMQEPASNQSTHPMITRSKKGITKPN
1640 1650 1660 1670 1680 1690
ATFCA5 PRYGLLTHKVKYAEPKTVTEALKHPGWTAAMHEEYDNCTEAQTWSLVPYTSDMNVLGSKW
1700 1710 1720 1730 1740 1750
ATFCA5 VFRTKLNADGSLDKLKARLVAKGFDQEEGIDYLETYSHVVRSATVRMVLHVATVMDWEVK
1760 1770 1780 1790 1800 1810
ATFCA5 QMDVKNAFLHGDLTETVYMLQPAGFVNKEKPTHVCHLHKALYGLKQAPRAWFDKFSNYLL
1820 1830 1840 1850 1860 1870
ATFCA5 EFGFNCSIKDPSLFIYLKGNDLILLLLYVDDMVLTGSNSATMIKLLEDLNTQFRMKDLGQ
1880 1890 1900 1910 1920 1930
ATFCA5 MHYFLGTQA
1940
Library scan: 0:00:01 total CPU time: 0:00:03