SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >MXH1.13 (Universal genetic code) : 139 aa
 vs  library
 searching atfca413 library

    559 residues in     1 sequences
The best scores are:                              s-w
ATFCA413, 559 bases, 217A checksum.                (559) 549

>>ATFCA413, 559 bases, 217A checksum.                (559 aa)
Smith-Waterman score: 549;   60.284% identity in 141 aa overlap

                                                  10        20     
MXH1.1                                    MKLNTDGASRGNPGLATVGGVVRDG
                                          .:..:::::::::: :..:::.:: 
ATFCA4 MAIEVTKAHNLVAGGSQSVARVERHIAWTKPPEGWVKVSTDGASRGNPGPAAAGGVIRDE
               10        20        30        40        50        60

          30        40        50        60        70        80     
MXH1.1 QGRWCGGFALNIGVCYGLYIAWERRFRRVELEVDSELVVGFLTRGISDTHPLSFLVRLCH
       .: : :::::...  . . . :.    :::::::::::::::  :::..:::.:::::::
ATFCA4 DGLWVGGFALQLA--F-VRLRWQSCGGRVELEVDSELVVGFLQSGISEAHPLAFLVRLCH
               70           80        90       100       110       

          90       100       110                 120       130     
MXH1.1 GFLSRDWLVHVTHVYREANRLADGLANYAFS----------FPLWFHLLDVAPPFVASFV
       :.::.::::.:.:::::::::::::::::::          ::   :   ..::..    
ATFCA4 GLLSKDWLVRVSHVYREANRLADGLANYAFSLQFEDATGTAFP--RHGRPLSPPLLPKKK
       120       130       140       150       160         170     

                                                                   
MXH1.1 EDDD                                                        
                                                                   
ATFCA4 TKLKQINLIFGSDFKMMVIESSMDDTRFNFLRNSADGYHALFEKKLAQFRLADPGYEDYH
         180       190       200       210       220       230     

ATFCA4 RKFVECYVLYRKGVTDVSDGMDIKVFHAPPEVRQATIVDKVAFLVSKYAWEFKLLVMGSN
         240       250       260       270       280       290     

ATFCA4 TKDPRFEFLMASPEDPIQVSYQRRLSRYCFQNHDKVPRLAPYTQSKPRVQSQRLVLPNLL
         300       310       320       330       340       350     

ATFCA4 QCRLLKGMTFTELDTVKVTAQFVAWYGDAFRGKLMERVMMDNQFEFMKQTDYMFAFFTAY
         360       370       380       390       400       410     

ATFCA4 MNTVLEGGENSMIEWHNSVSKDFVEDQELLPKLEMPPPTPPQKRPELDESALVPLEPEDQ
         420       430       440       450       460       470     

ATFCA4 FLAQHEGLSIFRVICVPDGGEVIKITVQSLSENVASLKEKIAEVVQIQANKQTLRGLRAV
         480       490       500       510       520       530     

ATFCA4 LKDNNRSLAYYNVKAGDILILDVV
         540       550         

Library scan:  0:00:00  total CPU time:  0:00:00