SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >MXH1.12 (Universal genetic code) : 408 aa
 vs  library
 searching tm021b043 library

   1609 residues in     1 sequences
The best scores are:                              s-w
TM021B043, 1609 bases, 1FA0 checksum.              (1609) 533

>>TM021B043, 1609 bases, 1FA0 checksum.              (1609 aa)
Smith-Waterman score: 533;   27.506% identity in 429 aa overlap

TM021B MDWNKEEACRAKTLAEDKMKEGDFVGAQKLLLKAQSLFSGLESLPQMLAVCDVHNSAEKK
               10        20        30        40        50        60

TM021B INCLENWYGILQVMHFADDATIKKQVRKLALLLHPDKNQFPGAEAAFKLVWDASRFLADK
               70        80        90       100       110       120

TM021B DKRSQYDIRRRIYLRLATNQLNANSGLQCAATNSATDTFWTCCEHCGYRYKYLRKYVNIL
              130       140       150       160       170       180

TM021B LNCNICQRSYMAYDTGFNEAPSKSNTGQKEVQNQGPCNTSLNTNGESIGAQPGSVAAEVD
              190       200       210       220       230       240

TM021B KKGTFNKKFNKRNGGGESKKTEVKNSKIETEFVRNDDEEKMKSAAKLHKPHPEVTEPEIG
              250       260       270       280       290       300

                                                          10       
MXH1.1                                            MEAYTQDALKAKQFAER
                                                   .::..:  : :  . :
TM021B ASKSVPDESVSRSDEAPSTSKDKNKMKKGVEESINVDGSDFIKDKAYSKDNNKRK--SPR
              310       320       330       340       350          

             20        30        40        50        60        70  
MXH1.1 R-----FAEKDFAGARSYALRAKSLFPDLEGLSQMLTTYEVYIASQSRKQYKKMAVLLHP
       :     .::..  .  : .   : :  .. ::..  :: .  ..  : :.. . .    :
TM021B RSQQSSYAEEEKISDNSLGPPKKRLRSNV-GLKSEQTTRKGLVGVGSSKRFDSGGGSSAP
      360       370       380        390       400       410       

             80        90       100       110       120       130  
MXH1.1 DKNKCLGANRAFQIISEAWSFLSSELDTFWTVCTYCKVQYEYLRKYVNKRLSCKNCRGAF
       .   :     ::.   .: .:..:    .  . .  : . :  :. : .. :     :  
TM021B S---C-----AFK--RKAKKFVDS---GYQEISSV-K-DKE--RE-V-RKAS-----GEG
               420         430           440            450        

            140       150       160       170       180       190  
MXH1.1 IAVETGPAPVSASLQYAPPSHTTSNGYGGHGYDAVSRMPTNSTYFLDSDFHDFDKNRLEE
       ...:   : .. .  . :  .  ..       :    .:       : .: .:.   :  
TM021B VVME---AKIDNN--HNPNENLITE-------D----LP-------DPEFSNFE---LTT
              460         470                         480          

             200       210       220        230       240       250
MXH1.1 -CFEARQIWAIYDEDDGMPRLYCMVREVLSVQP-FKIDIAYLSSKTDIEFGTMKWVQYGF
        :: . :.:..::  :::::::  . .:: : : ::. :....   : . ...  .    
TM021B SCFGVNQVWSMYDPIDGMPRLYARIDKVL-V-PEFKLWITWIDPLQDNKDNSIP-I----
       490       500       510         520       530        540    

              260        270           280       290       300     
MXH1.1 TKSCGHFRIRNTDIV-DHVNIFS----HLLKGKKTGRGGCVRIFPQTGDIWTVYKNWSPN
         .:: :.  ...   ::.. ::    ::     : :.. : :.:. :.::.....:. .
TM021B --ACGIFQGGGSEEENDHLK-FSCQMFHL-----T-RNNSVVIYPRKGEIWAIFRGWDIS
                550        560             570       580       590 

         310         320       330       340       350         360 
MXH1.1 WNNSTPDEVRH--QYKMVEILDEYSEQFGVCIAPLVKVDGYKTVYCRRDKEES--KKWIP
       :. :. .. .:  .: .::.:...... :. .. : ::.:. ... :.: ...  .  ::
TM021B WSASSENH-KHPYEYDFVEVLSNFNDENGLGVGFLGKVEGFVSLF-RQDAQDGVLQLQIP
              600       610       620       630        640         

             370        380       390       400                    
MXH1.1 RREMLRFSHQVPS-RFLKEETCGVPGNCWDLDPSAIPEELL--HNG---AGTD       
         .::::::.::: ..  .:  ::: .:..:::.:.:.::.  ...   .: :       
TM021B PSQMLRFSHKVPSFKMTGKEREGVPPGCFELDPAALPKELFEVYDSKVDVGLDRELPNGK
     650       660       670       680       690       700         

TM021B TGGPFPEASKVEMQANTTRESSPFKKKRPKVHDNHGSFSKESDGRRTNHERNSAKESRKS
     710       720       730       740       750       760         

TM021B VKAVDALNLRKSPRLLSETNSQANSRSGRQIAEKKSANNGESCGKPGGLSLSGEKMSEKT
     770       780       790       800       810       820         

TM021B ITRMRKTPQDIHKPTVNVKKHGRNDESLSQSRGDGLLTQLNGNMKSSEPETRVPSSCKTV
     830       840       850       860       870       880         

TM021B KENTFNFENQRSWDKFQIDQIWAIYSNDKGSPRKYAQIKKIDTSPEFKLHVAPLELYRPP
     890       900       910       920       930       940         

TM021B IHMPRPVCCGRFKLKTGKAEVYVPSSFSHQVKAVKTKKNRFEVYPGKGEIWALYKNCNTR
     950       960       970       980       990      1000         

TM021B DYTETEELEIVEVVETDEQRIQAMTLTAKGFNNKPLYRRSEESNASFIMERNLCEEDDSD
    1010      1020      1030      1040      1050      1060         

TM021B VDIMLLMVVGSVDAYESQIPRPMRRQITKKGHAYIQKALKDDPIHFRQLYRMNPEVFAEL
    1070      1080      1090      1100      1110      1120         

TM021B CHLLQMKTGLKGTPHVCVEEMVATFLITVGQNSRYCHTMDTFKRSKFSTSINFHKVLRAL
    1130      1140      1150      1160      1170      1180         

TM021B NMLAPTLMAKVTNTVPSKISKTTRFYPYFKDCVGAIDGTHINAMVQGPEKASYRNRKGVI
    1190      1200      1210      1220      1230      1240         

TM021B SQNVLAACNFDLEFIYVLSGWEGSAHDSKVLQDALTRRTNRLQVPEGNRLQVLKGITMGD
    1250      1260      1270      1280      1290      1300         

TM021B SQPKKRKKGDYNPWSPEETKLLVQLLVEGINNNWRDSNGTISKLTVETKFMPEINKEFCR
    1310      1320      1330      1340      1350      1360         

TM021B SKNYNHYLSRMKYLKIQYQSCLDLQRFSSGFGWDPLTKRFTASDEVWSDYLKAHPNNKQL
    1370      1380      1390      1400      1410      1420         

TM021B RYDTFEFFDELQIIFGEGVATGKNAIGLCDSTDGLTYRAGENPRKEYVDDFDNVYEYDTT
    1430      1440      1450      1460      1470      1480         

TM021B THHESSEHYAPFMSHGTSESPKLPPRKRTRSERSTSQKEESPMMVVSSKILDIIQQREER
    1490      1500      1510      1520      1530      1540         

TM021B QQNEVAQKKNNVWDAIKEISDLDECIRYKALTKIYHLGIQDVFVSMSVEERLGWIQTIME
    1550      1560      1570      1580      1590      1600         

Library scan:  0:00:00  total CPU time:  0:00:02