SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >MXF12.P2 (Universal genetic code) : 45 aa
 vs  library
 searching prf::2021344A library

    804 residues in     1 sequences
The best scores are:                              s-w
prf||2021344A                                      (804) 127

>>prf||2021344A                                      (804 aa)
Smith-Waterman score: 127;   46.667% identity in 45 aa overlap

prf||2 KRSRAVNGSSGLCMSIASASASPTSPVTTDATSMPSLPSEGFTGGISLSGGGTSGDAGGS
               10        20        30        40        50        60

prf||2 GGAAGGDSGSGGGGGGAAADSGAAGDGGSGAAAAGDVGVAPVGLQGTDTTNAIIIEGDTP
               70        80        90       100       110       120

prf||2 VIDDDVPCAKRQKKCTSDVWQYFTKKTVTKEENGKVYQQMWAHCNYDKCKHKGRCGSNYG
              130       140       150       160       170       180

prf||2 TTGFWTHLRVAHSVVKGQQQLKVEKDSSKDITTIAPYRYDEEVSLRKFYLAIVMHEYPFN
              190       200       210       220       230       240

prf||2 IAEHEYEVEFIKSLRPSFPIKSRITIRNEILGMFVQEKEKLYAYFKTVKSRFSATMDMWT
              250       260       270       280       290       300

prf||2 SNQNKSYMCVTLHWIDDNWCIQKRIVNFVHVKGRHTGIKLSETFTKLRVKWYIDKKLFSL
              310       320       330       340       350       360

prf||2 TLDNASANEVAVKDIIADLLSSTSSALACDGAFFHVRCACHILNLVARDGLSVIAPTIEN
              370       380       390       400       410       420

                                       10        20        30      
MXF12.                         CVESVGIRSGAGLYLDVPTRWNSTYDMFARALKFRM
                               :    :. .. :: ::: ::::::: :.  :: .. 
prf||2 IRQLVLAVKGSSLQLDELMRRATEC----GLDTSKGLSLDVATRWNSTYLMLRDALYYKA
              430       440           450       460       470      

         40                                                        
MXF12. TFASLKECD                                                   
       .:  ::  :                                                   
prf||2 AFMRLKSSDRRMYEKITPSPSEWAMAFKQFQCLKKFYDLTELFSGTLYPTANFFYRGFCE
        480       490       500       510       520       530      

prf||2 IKILLDDWCLSKDAIISGMATSMNKKFEKYWKKSSTTLSVACFLDPRYKKRLIEFYMRKF
        540       550       560       570       580       590      

prf||2 HGSASQVHVDALVDFIKKLYSYVSAEPSSSKPKSKADEHRDLDTADLLVDSDDELENYLY
        600       610       620       630       640       650      

prf||2 ESSGPDGDDMNELDKYMADPPLRFSGQFDILAWWKNQSDEYPILAKIARDLLAVQVSTVA
        660       670       680       690       700       710      

prf||2 SESAFSAGGRVVDPFRSRLDPEMVQALICMKDWVAAGRRGNKTNLVPMFVQLFTITILAD
        720       730       740       750       760       770      

prf||2 LYVLLTLFFREEGWFNCWPSYRGPCPEK
        780       790       800    

Library scan:  0:00:00  total CPU time:  0:00:00