SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >MUF9.14 (Universal genetic code) : 407 aa
 vs  library
 searching atfca85 library

    364 residues in     1 sequences
The best scores are:                              s-w
ATFCA85, 364 bases, 124C checksum.                 (364)1079

>>ATFCA85, 364 bases, 124C checksum.                 (364 aa)
Smith-Waterman score: 1079;   46.798% identity in 406 aa overlap

               10        20        30        40        50        60
MUF9.1 MTMMSDLSEDLVEEILCRVSITSLGAVRSTCKGWYVLSKTRVLCKAETKHQFLGFMKKNY
          ::::: ::: ::: :: .::: .:: ::: : .:::  .. ::  : ::.::   . 
ATFCA8    MSDLSPDLVGEILTRVPMTSLISVRCTCKMWNALSKEGIFFKAARK-QFMGFTMMDS
                  10        20        30        40         50      

               70        80        90       100       110       120
MUF9.1 KLCSMRFDLHGNFNEEGGEEFMNPSIKKSGNLLDQLDICKVFQCDGLLLCVTKEENTRLV
       ..:::.:::.:  :.:  ..:..: ::. ..: ::... ::.:::::::::         
ATFCA8 RVCSMKFDLQGIRNNE--HDFVDPCIKQIAKL-DQIEVSKVLQCDGLLLCV---------
         60        70          80         90       100             

              130       140       150       160         170        
MUF9.1 VWNPYSGQIRWIKCNNSYHRYEGYAIGYNNNRKHKILRFSDMS--FSTYKIYDFISNSWR
             :: :.::  . ... : ::.::.::...:::   : .  :. :.:::: :.:::
ATFCA8 ------GQTRFIKPRKRFNKLEWYALGYDNNHNYKILMNYDTGHLFG-YEIYDFSSDSWR
                110       120       130       140        150       

      180       190        200         210       220        230    
MUF9.1 VLDIAPNWHINP-DQRGASLKGNTYFFAREK--REDEEDEDILWQPVE-YLLCFDFTTEN
       :::..:. :: :  :...::.:::::.:.::   : ::.: .. . .: .::::::::: 
ATFCA8 VLDVSPDCHI-PFHQQSVSLNGNTYFLAQEKIIVEGEEEE-VV-DEIEKFLLCFDFTTER
       160        170       180       190         200       210    

           240       250       260       270       280       290   
MUF9.1 FG-QLHPLPFEQYIDDAGALSSFGEEKLAALFQSFASSVVEIWVTSMIEANAVSWIPFLK
       :: .: ::::.. . .. :.:   ...::.:.: : .   :::::. :. .::::  ::.
ATFCA8 FGPRL-PLPFHSDVLETVAISCVRDDQLAVLYQRFET--WEIWVTTKIDPTAVSWSMFLS
           220       230       240       250         260       270 

             300        310       320       330          340       
MUF9.1 VDMKPH--CSFRFRLPFD-GGSFFIDEEKKVAVVIHVDVV---AESEMNRYEDVAYIIGE
       :::.:   :.:      : .::::::::.:::: .. :.    .:..  ::  .:::::.
ATFCA8 VDMEPPTGCQFD-----DEAGSFFIDEENKVAVFFNSDLFNPRVENRNRRYP-TAYIIGQ
             280            290       300       310        320     

       350       360       370        380           390       400  
MUF9.1 NGYVKKVCLVEAVNQGGSLNLSKRSCCNYPHV-CC----SSYVPSLAQINQSVEFENERE
       .:: :.. : ::       .: : .    :.: ::    :::.:::.:.           
ATFCA8 DGYFKSATLREAP------DLVKPD----PYVYCCPLVWSSYAPSLVQL           
         330             340           350       360               

            
MUF9.1 EEEAN

Library scan:  0:00:00  total CPU time:  0:00:00