SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >MUF9.12 (Universal genetic code) : 255 aa
 vs  library
 searching yaae_bacsu library

    196 residues in     1 sequences
The best scores are:                              s-w
YAAE_BACSU, 196 bases, 2034 checksum.              (196) 543

>>YAAE_BACSU, 196 bases, 2034 checksum.              (196 aa)
Smith-Waterman score: 543;   42.291% identity in 227 aa overlap

                10        20        30        40        50         
MUF9.1  MTVGVLALQGSFNEHIAALRRLGVQGVEIRKADQLLTVSSLIIPGGESTTMAKLAE-YH
        .:.:::.:::.  ::: :..  :. :. ... .::  :..::.:::::::: .: . :.
YAAE_B MLTIGVLGLQGAVREHIHAIEACGAAGLVVKRPEQLNEVDGLILPGGESTTMRRLIDTYQ
               10        20        30        40        50        60

       60        70        80        90       100       110        
MUF9.1 NLFPALREFVKMGKPVWGTCAGLIFLADRAVGQKEGGQELVGGLDCTVHRNFFGSQIQSF
        . : ::::. .:::..:::::::.:: . .:.   . .: : :. .:.:: :: :..::
YAAE_B FMEP-LREFAAQGKPMFGTCAGLIILAKEIAGSD--NPHL-GLLNVVVERNSFGRQVDSF
                70        80        90          100       110      

      120       130       140       150       160       170        
MUF9.1 EADILVPQLTSQEGGPETYRGVFIRAPAVLDVGPDVEVLADYPVPSNKVLYSSSTVQIQE
       :::. .  :  .:  :  . ::::::: .:..: .::::...   ...            
YAAE_B EADLTIKGL--DE--P--FTGVFIRAPHILEAGENVEVLSEH---NGR------------
        120             130       140       150                    

      180       190       200       210       220       230        
MUF9.1 EDALPETKVIVAVKQGNLLATAFHPELTADTRWHSYFIKMTKEIEQGASSSSSKTIVSVG
                :::.:::..:. .:::::: : :  . :..:..: .: :            
YAAE_B ---------IVAAKQGQFLGCSFHPELTEDHRVTQLFVEMVEEYKQKALV          
                  160       170       180       190                

      240       250     
MUF9.1 ETSAGPEPAKPDLPIFQ

Library scan:  0:00:00  total CPU time:  0:00:00