SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >MUF9.11 (Universal genetic code) : 439 aa
 vs  library
 searching piaemb7r library

    320 residues in     1 sequences
The best scores are:                              s-w
PIAEMB7R, 320 bases, 1316 checksum.                (320) 840

>>PIAEMB7R, 320 bases, 1316 checksum.                (320 aa)
Smith-Waterman score: 840;   42.140% identity in 299 aa overlap

               10        20        30        40        50        60
MUF9.1 MERRQSYVLVALIGLLLLTDIVIAQSDGGKGNGNNGKGNEVQVDKGKGDNGKSNGNGPKD

               70        80        90       100       110       120
MUF9.1 KEQEKKDKEKAAKDKKEKEKKDKEEKEKKDKERKEKEKKDKLEKEKKDKERKEKERKEKE

              130       140       150         160        170       
MUF9.1 RKAKEKKDKEESEAAARYRILSPLPTGQEQAMCQGR--GSCY-YKTLVCPGECPKRKPTK
                                    .: :  .    :: :.   ::..::      
PIAEMB   MAANKLMNVVAVAVCVMVMVNAASAVGKAKCTDKWYPRCYGYQ-YDCPANCP-----Y
                 10        20        30        40         50       

       180       190       200       210       220       230       
MUF9.1 NKNTKGCFIDCTNKCEATCKWRKTNCNGYGSLCYDPRFVGGDGVMFYFHGSKGGNFAIVS
       :     : .:: . :...:      :.  :..: ::::.::::.::::::..  .: ..:
PIAEMB N-----CDMDC-KTCKTVCP-----CDKPGGVCQDPRFIGGDGIMFYFHGKRDQDFCLIS
                   60             70        80        90       100 

       240       250       260       270        280       290      
MUF9.1 DNNLQINAHFIGTRPVGRTRDFTWVQALNVMFEN-HKLVITANRVNQWDETSDAFTIRYD
       :.::.::::::: :  :  :::::::...:..:. ... . :..:. ::.. : .:.  .
PIAEMB DSNLHINAHFIGKRGQGMGRDFTWVQSIGVLLEDGRQFYLGAKKVSTWDNSVDQLTMALN
             110       120       130       140       150       160 

        300       310       320       330       340       350      
MUF9.1 GELITLPEDEQSEWREISGQKKDIIIERTDERNSVRVLVSDLVQMDIRVRPIGKEENRVH
       :. .:::  : . :   ::    . . :.:. : : : : : .... :: ::..::.:::
PIAEMB GQTLTLPPGEGATWATASG----LNVTRSDRANEVVVQVEDKLKISARVVPISEEESRVH
             170       180           190       200       210       

        360        370       380       390       400       410     
MUF9.1 NYQL-PQDDAFAHLETQFKFLDLSELVEGVLGKTYRPDYVSSAKTGVPMPVLGGEDKYQT
       :: .   .: ::::: .::: .::  : ::::.::  .: : .: :: ::..:::..: :
PIAEMB NYGIIAGEDCFAHLELSFKFYSLSPNVSGVLGQTYGAEYRSPVKMGVAMPIMGGESNYVT
       220       230       240       250       260       270       

         420         430                          
MUF9.1 PSLFSPTCRLCRF--KPQEE-SL-SA-DI              
        .::.  :.. ::  . ..: .. :: :               
PIAEMB SNLFAADCKVARFASSSDDEYAITSALDCNSGRGSGHGIVSRR
       280       290       300       310       320

Library scan:  0:00:00  total CPU time:  0:00:00