SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >MUA2.12 (Universal genetic code) : 512 aa
 vs  library
 searching bioa_bacsh library

    455 residues in     1 sequences
The best scores are:                              s-w
BIOA_BACSH, 455 bases, 1BDF checksum.              (455) 705

>>BIOA_BACSH, 455 bases, 1BDF checksum.              (455 aa)
Smith-Waterman score: 705;   30.178% identity in 507 aa overlap

               10        20        30         40        50         
MUA2.1 MVLANLERLERLNGMAKLAGEVFWWPFTQHKLVHQETVT-VIDSRCGENFSIYKASDNSS
                              : : .: :    :.   .. .. ::.  .:   :...
BIOA_B        MKQVLTELQEKDLQHVWHPCSQMK--DYEAFPPIVIKK-GEGVWLY---DEQN
                      10        20          30         40          

      60         70            80        90       100        110   
MUA2.1 LSQQF-DACASWWTQ--G-PDPTF-QAELAREMGYTAARFGHVMFPENV-YEPALKCAEL
         :.. :: .:::..  :  .: . :: :. :...:   . :..:  :  .:::.: :. 
BIOA_B --QRYLDAVSSWWVNLFGHANPRISQA-LS-EQAFT---LEHTIFA-NFSHEPAIKLAQK
          50        60        70             80         90         

           120       130       140       150       160       170   
MUA2.1 LLDGVGKGWASRVYFSDNGSTAIEIALKMAFRKFCVDHNFCEATEEEKHIVVKVIALRGS
       :.  . ..  ..:.:.::::.:::.::::.: ..   :   .. . .:.   . .::  .
BIOA_B LVALTPQSL-QKVFFADNGSSAIEVALKMSF-QY---H--MQTGKTQKK---RFLALTDA
     100        110       120        130            140            

           180       190       200       210       220       230   
MUA2.1 YHGDTLGAMEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWNISLPESFSEIAPEY
       :::.::::. . . . :.  . ::      :.::  ::  ..:      :. :    :  
BIOA_B YHGETLGALSVGGVDLYNE-VYQP------LLLD--TVR-AQG------PDCFR--CP--
     150       160        170                180                   

           240       250       260       270       280       290   
MUA2.1 GTFTSRDEIFDKSRDASTLARIYSAYLSKHLQEHSGVRQSAHVGALIIEPVIHGAGGMHM
                : .  : :  :.  : ..  .:. :   ..   . :.::::.:..:.::.:
BIOA_B ---------FKHHPD-SCHAQCIS-FVEDQLRMHH--KE---ITAVIIEPLIQAAAGMKM
              190        200        210            220       230   

            300       310       320       330       340       350  
MUA2.1 VDP-LFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELLGCKPDIACFAKLLTGGMV
         : .. : : . : .  . .: ::. .:: : :.  . :  . .::. :..: ::::..
BIOA_B Y-PAIYLRRLRELCTQYDVHLIADEIAVGFGRTGTLFACEQANISPDFMCLSKGLTGGYL
            240       250       260       270       280       290  

            360       370        380       390       400       410 
MUA2.1 PLAVTLATDAVFDSFSGD-SKLKALLHGHSYSAHAMGCATAAKAIQWFKDPETNHNITSQ
       ::.:...:. :...:  : . .::.::.:::......: .: ...  :.. .    . ..
BIOA_B PLSVVMTTNDVYQAFYDDYATMKAFLHSHSYTGNTLACRVALEVLAIFEEEQYIDVVQDK
            300       310       320       330       340       350  

             420       430       440         450              460  
MUA2.1 GKTLRELWDEELVQQISSHSAVQRVVVIGTLFALELKA--DASN---S----GYASLYAK
       :. .:.:    : . .:.   : .   .: . :.:: :  :...   :    :: ..: .
BIOA_B GERMRKL---AL-EAFSDLPFVGEYRQVGFVGAIELVANRDTKEPLPSEERIGY-QIYKR
               360        370       380       390       400        

            470       480         490       500        510     
MUA2.1 SLLIMLREDGIFTRPLGNVIYLMCGP--CTSPEICRRLLTKLYK-RLGEFNRT   
       .:       :.. ::::::.:.:  :   :. :.  ... .  :  . .:      
BIOA_B AL-----AKGLLIRPLGNVLYFM-PPYIITDDEM--QFMIQTTKDTIVQFFEEREG
            410       420        430         440       450     

Library scan:  0:00:00  total CPU time:  0:00:01