SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >MTI20.14 (Universal genetic code) : 859 aa
 vs  library
 searching mmu70368 library

    545 residues in     1 sequences
The best scores are:                              s-w
MMU70368, 545 bases, 1353 checksum.                (545) 940

>>MMU70368, 545 bases, 1353 checksum.                (545 aa)
Smith-Waterman score: 940;   33.096% identity in 562 aa overlap

               10        20        30        40        50        60
MTI20. MEVATSSTEITIQTDRDPSSNNNGSCAVASSTASAVFRKIEFHPARKPFNGFSNGRSDFK

               70        80             90       100       110     
MTI20. IETLNPCSSNQRLLSAPSAKK--PDSSDL---LEHGFEPDLTFSITFRKIGAGLQNLGNT
                    ::.:.:..   : ...   :  . .:.:..    .  : :::: ::.
MMU703 MVVSLSFPEADPALSSPGAQQLHQDEAQVVVELTANDKPSLSWECP-QGPGCGLQNTGNS
               10        20        30        40         50         

         120       130       140        150       160         170  
MTI20. CFLNSVLQCLTYTEPLAATLQTAAH-QKYCHVAGFCALCAIQKHVRTA--RQANGRILAP
       :.::..:::::.: :::  . .  . :  :   : : .::.. ::  .  .. .: .. :
MMU703 CYLNAALQCLTHTPPLADYMLSQEYSQTCCSPEG-CKMCAMEAHVTQSLLHSHSGDVMKP
      60        70        80        90        100       110        

            180       190       200        210         220         
MTI20. KDLVSNLRCISRNFRNCRQEDAHEYMINLLECMHK-CSLPSGVPSE--SSDAYRRSLVHK
       ......       :.. .::::::...  :: ::. : :     ::  : :.   : .: 
MMU703 SQILTS------AFHKHQQEDAHEFLMFTLETMHESC-LQVHRQSEPTSEDS---SPIHD
      120             130       140        150       160           

     230       240       250       260       270       280         
MTI20. IFGGSLRSQVKCEQCSHCSNKFDPFLDLSLDISKADSLQRALSRFTAVELLDNGAKVYQC
       ::::  :::.:: .:.  :. .: :::. ::::.:.:...::      : :  : ..: :
MMU703 IFGGLWRSQIKCLHCQGTSDTYDRFLDVPLDISSAQSVNQALWDTEKSEEL-RGENAYYC
      170       180       190       200       210        220       

     290       300       310       320       330       340         
MTI20. ERCKQKVKAKKQLTVSKAPYVLTVHLKRFEAHRSEKIDRKVDFTSAIDMKPFVSGPHEGN
        ::.::. :.: : . .:: :: . :::: :  ..:.::::..   .:.::..: :  : 
MMU703 GRCRQKMPASKTLHIHSAPKVLLLVLKRFSAFMGNKLDRKVSYPEFLDLKPYLSQPTGGP
       230       240       250       260       270       280       

     350       360       370       380       390       400         
MTI20. LKYTLYGVLVHYGRSSHSGHYACFVRTSSGMWYSLDDNRVVQVSEKTVFNQKAYMLFYVR
       : :.::.:::: : . :::::  .:..  : ::..::..:.. .  .:.:..::.::::.
MMU703 LPYALYAVLVHEGATCHSGHYFSYVKARHGAWYKMDDTKVTSCDVTSVLNENAYVLFYVQ
       290       300       310       320       330       340       

       410          420        430       440       450       460   
MTI20. --D-RQNAV--PKNSV-PVVKKESFATNRASLIVASNIKDQVNGSTVIKECGFGALVANG
         : .: ..  :.. :  :.  : .  ..      :  : . . :     :   :    :
MMU703 QTDLKQVSIDMPEGRVHEVLDPE-YQLKK------SRRKKHKKKSP----CTEDA----G
       350       360       370              380           390      

           470       480       490       500       510       520   
MTI20. LAPLKSCGPSTPAVLTQKDLNAKETQNNAISNVEAKEILETENGSAPVKTCDLAAPTVLV
         :   :          :. . . :......  :.: . . .: .   :. .    : ::
MMU703 -EP---C----------KNREKRATKETSLG--EGK-VXQEKNHK---KAGQKHENTKLV
                          400         410        420          430  

           530           540           550       560         570   
MTI20. QKDLNTKEIFQK----EVPLPQA-NGE--G-SLVKEDSKAACLILP-EKVSPHL-DGSAN
        .. : ... ::    :. :::  : .  : ::  .....  : :: . .  ::  .. :
MMU703 PQEQNHQKLGQKHRINEI-LPQEQNHQKAGQSL--RNTEGE-LDLPADAIVIHLLRSTEN
            440       450        460         470        480        

            580       590        600       610       620       630 
MTI20. -AQTLVKLPTLGPKAENSV-EEKNSLNNLNEPANSLKVINVSVGNPPVEKAVLIDQTMGH
        ..        .:  ::.  .. . : . ..:.:.                         
MMU703 WGRD-------APDKENQPWHNADRLLTSQDPVNTGQLCRQEGRRRSKKGKNKNKQGQRL
      490              500       510       520       530       540 

             640       650       660       670       680       690 
MTI20. HLEESATSIESLKLTSERETLTTPKKTRKPKTKTLKVEFKFFKLALGLRKKKVQRRERLS
                                                                   
MMU703 LLVC                                                        
                                                                   

             700       710       720       730       740       750 
MTI20. TTVAGEIISEELLSKKRVKYQDTSLIAPSKMISSSDGAVTSDQQQPVGSSDLSEASQNAK

             760       770       780       790       800       810 
MTI20. RKRESVLLQKEAVNILTRGVPETVVAKWDEEISASQKRGSKSEGASSIGYVADEWDEEYD

             820       830       840       850         
MTI20. RGKKKKIRIKEESYRGPNPFQMLASKRQKETKKKWTQSITDAKTAYRI

Library scan:  0:00:00  total CPU time:  0:00:02