SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >MTI20.13 (Universal genetic code) : 210 aa
 vs  library
 searching rpb5_human library

    210 residues in     1 sequences
The best scores are:                              s-w
RPB5_HUMAN, 210 bases, 5A6 checksum.               (210) 518

>>RPB5_HUMAN, 210 bases, 5A6 checksum.               (210 aa)
Smith-Waterman score: 518;   39.623% identity in 212 aa overlap

                 10        20        30        40          50      
MTI20. MSDMDDEI-T-RIFKVRRTVLQMLRDRGYTIEESDLNLKREEFVQRFC-K-TMNKVNKEA
          ::::  : :..:.:.:..:. .:::: . ...:.   :::  .:  : . ..  .  
RPB5_H    MDDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTD
                  10        20        30        40        50       

         60        70        80        90        100       110     
MTI20. LFVSANKGPNPADKIYVFYPEGPKVGVPVIKKEVAI-KMRDDKVHRGIVVVPMAITAP-A
       : : . .. .:.:...::.:: ::::. .::  :   .:..... :...:: ...: : :
RPB5_H LTVLVAHNDDPTDQMFVFFPEEPKVGIKTIK--VYCQRMQEENITRALIVVQQGMT-PSA
        60        70        80          90       100       110     

          120        130       140       150       160       170   
MTI20. RMAVSELN-KMLTIEVFEEAELVTNITEHKLVNKYYVLDDQAKKKLLNTYTVQDTQLPRI
       .... ..  :.. .: : : ::. :::::.:: .. :.  .   .::  : ....:::::
RPB5_H KQSLVDMAPKYI-LEQFLEQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRI
          120        130       140       150       160       170   

           180       190       200       210
MTI20. LVTDPLARYYGLKRGQVVKIRRSDATSLDYYTYRFAV
        . ::.:::.:.:::::::: : . :.  : :::.. 
RPB5_H QAGDPVARYFGIKRGQVVKIIRPSETAGRYITYRLVQ
           180       190       200       210

Library scan:  0:00:00  total CPU time:  0:00:00