SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >MTI20.11 (Universal genetic code) : 560 aa
 vs  library
 searching mtcy1544 library

    495 residues in     1 sequences
The best scores are:                              s-w
MTCY1544, 495 bases, 1572 checksum.                (495)1129

>>MTCY1544, 495 bases, 1572 checksum.                (495 aa)
Smith-Waterman score: 1129;   41.860% identity in 516 aa overlap

               10        20        30        40          50        
MTI20. MSSFYLSSSPIFKLQWHANHKPKPNRAIVSFPPSRLHANCYSWR--LSCNLAQHGIELEE
                                          . ::  . :   .:   .: . :  
MTCY15                                    MPANSDA-RPAATC---HHRV-LAM
                                                   10            20

       60          70          80        90        100       110   
MTI20. TVEEDEILQV-L-DL-PTE-ETNLDNETIASPSKMLRKKKG-DEESLDDRFKLRNGKEIF
       :   :   :. : :. :.  :  :.... :     ::.  : . : : :  ...  ... 
MTCY15 TYP-DPP-QTGLSDFTPSLGELALEDRS-A-----LRRVAGLSTE-LADVSEVEY-RQLR
                 30        40              50         60         70

           120       130       140       150       160       170   
MTI20. EEKAYLVGVERKGDGECLFNIEESLEELEQLADTAGLAVVGSTYQKLASPNPRTYIGSGK
        :.. ::::  .:..    . . :: ::  ::.:::  :. .  :.  .:.: :::::::
MTCY15 LERVVLVGVWTEGSAA---DNRASLAELAALAETAGSQVLEGLIQRRDKPDPSTYIGSGK
               80           90       100       110       120       

           180       190       200       210       220       230   
MTI20. VAEIKSAINALDVETVIFDDELSPGQLRNLEKAFGGDVRVCDRTALILDIFNQRAATHEA
       .::.. .: :  ..::: : ::::.::  ::::   .:.: :::::::::: :.:...:.
MTCY15 AAELREVIVATGADTVICDGELSPAQLTALEKAV--QVKVIDRTALILDIFAQHATSREG
       130       140       150       160         170       180     

           240       250               260         270       280   
MTI20. ALQVALAQMEYQLPRLTRMWTH-LERQ-------SGGQV--KGMGEKQIEVDKRILRTQI
         ::.::::::.:::: : : . . ::       ::: :  .: :: .::.:.: .: ..
MTCY15 KAQVSLAQMEYMLPRL-RGWGESMSRQAGGRAGGSGGGVGLRGPGETKIETDRRRIRERM
         190       200        210       220       230       240    

           290       300       310       320       330       340   
MTI20. GVLKKELESVRKHRKQYRSRRVAIPVPVVSLVGYTNAGKSTLLNQLTGANVLAENRLFAT
       . :......... :   ::::    :: ...:::::::::.::: ::::.::... ::::
MTCY15 AKLRRDIRAMKQVRDTQRSRRRHSDVPSIAIVGYTNAGKSSLLNALTGAGVLVQDALFAT
          250       260       270       280       290       300    

           350       360       370       380       390         400 
MTI20. LDPTTRRVQMQNGKEFLLTDTVGFIQKLPTTLVAAFRATLEEIAESSLLVHVVDIS--HP
       :.:::::... .:.  .:::::::...::: :: :::.::::.....::::::: :  ::
MTCY15 LEPTTRRAEFGDGRPVVLTDTVGFVRHLPTQLVEAFRSTLEEVVHADLLVHVVDGSDGHP
          310       320       330       340       350       360    

             410           420       430       440       450       
MTI20. LAEQQIEAVEKVMSEL----DVSSIPKLVVWNKVDRVDDPQKVKLEAEETGDTICISALT
       ::  ::.::..:.::.    : .  :.:.: :::: ..: . .::.    : .. .:: :
MTCY15 LA--QIDAVRQVISEVIADHDGDPPPELLVVNKVDVASDLMLAKLRHGLPG-AVFVSART
            370       380       390       400       410        420 

       460       470           480       490       500             
MTI20. GEGLDDFCNAVHEKLKDSMV----WVEALLPFDKGDLLSTIHKVGMVKET---PK--RMN
       :.:.:    :..... . .:     :....:.:.:::.. .:  : ....   :.  :..
MTCY15 GDGID----ALRRRMAELVVPADTAVDVVIPYDRGDLVARVHADGRIQQAEHKPEGTRIK
                 430       440       450       460       470       

      510       520       530       540       550       560
MTI20. QNHSKNLKACLLVRIGGYVCFAKASESKRNSNNLLIIHTTKNDSQTVKNIRR
           . : : :                                         
MTCY15 ARVPEALAATLREFAPRA                                  
       480       490                                       

Library scan:  0:00:00  total CPU time:  0:00:01