SSEARCH searches a sequence database using the Smith-Waterman algorithm version 2.0u54, July. 1996 Please cite: T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; W.R. Pearson (1991) Genomics 11:635-650 >MTE17.11 (Universal genetic code) : 802 aa vs library searching atfca023 library 1662 residues in 1 sequences The best scores are: s-w ATFCA023, 1662 bases, 1045 checksum. (1662)1126 >>ATFCA023, 1662 bases, 1045 checksum. (1662 aa) Smith-Waterman score: 1126; 30.500% identity in 1000 aa overlap ATFCA0 MKKHFTLPRNAILRDGGEPHSPNPSISKSKPPRKLRSAKENAPPLDRNTSTPDHRSMRMK 10 20 30 40 50 60 ATFCA0 NPLPPRPPPSNPLKRKLSAETATESGFSDSGVKEQMFQLVGAPLVENCLSGFNSSVFAYG 70 80 90 100 110 120 ATFCA0 QTGSGKTYTMWGPANGLLEEHLCGDQRGLTPRVFERLFARIKEVMPGFVQFVVLTLNKSS 130 140 150 160 170 180 ATFCA0 MLKGNSITNVGAHYSRFSDWLHYISLDDLQRANNRPTGPKPEKPDGKHGVHRFSLMCHQI 190 200 210 220 230 240 ATFCA0 REDVKSGVYVENLTEEYVKNLTDVSQLLIKGLGNRRTGATSVNTESSRSHCVFTCVVESR 250 260 270 280 290 300 10 20 30 MTE17. MKSPAKIGESRF--LGNI--STSSIRNLLPRSIY :: . :: :. ::: : :.. ::. .: ATFCA0 CKNVADGLSSFKTSRINLVDLAGSERQKSTGAAGE-RLKEAGNINRSLSQLGNLI--NIL 310 320 330 340 350 40 50 60 70 80 MTE17. AKQKSIQNADTKKSFRSNDENSPPCDPNIQ--TNHHLNNDDDLHLKKK-SP-QKVFPSAT : . : : : : : . : : . .. :... : . :: :. : : ATFCA0 A-EIS-Q---TGKP-R----HIPYRDSRLTFLLQESLGGNAKLAMVCAVSPSQR---SET 360 370 380 390 400 90 100 110 120 130 140 MTE17. QQILPKESTQFEAKSVLVTRANSMANEITEED-DSL-G--HQIRDLKEELIRTKSDGYKP . : . .: .::.. ..: ..::. ..: . : : ::.:: :: : :.:: .: ATFCA0 FSTL--RFAQ-RAKAIQ-NKA--VVNEVMQDDVNFLRGVIHQLRD---ELQRMKNDGNNP 410 420 430 440 450 150 160 170 MTE17. DGSKNGYFV----RESLSQLRN-SIN--KSL--------V-MS---------C------- . . .: . :.::. ::. ... .:: . : : ATFCA0 TNPNVAYSTAWNARRSLNLLRSFGLGHPRSLPHEDNDGDIEMEIDEAAVERLCVQVGLQS 460 470 480 490 500 510 180 190 200 MTE17. ----E------NR----QGSEKETMYEEEY--DDDV-VE-----LSKH----INKFHTNC : :: ..:. ... :.. :.:: .: .: .....:. ATFCA0 SLASEGINHDMNRVKSIHSSDGQSI-EKRLPEDSDVAMEDACCHTENHEPETVDNMRTET 520 530 540 550 560 570 210 220 230 240 MTE17. DSDDLRDS-IQS---SFASASGCEADSMSGDEICS-VDKHKDHKDC----------A--- .. .:.. :.. .. :. . :.. : .:: ..: .: ..: : ATFCA0 ETG-IRENQIKTHSQTLDHESSFQPLSVK-DALCSSLNKSEDVSSCPDLVPQDVTSANVL 580 590 600 610 620 630 250 260 270 280 290 MTE17. LADSG---PSAVGNGISISL---P-HQSRILEEPPLSESPKIRNFRKSVAASTKFQASPR .:: : : . :. : :: : . .:. : :: :: ::: :::. .: :: . ATFCA0 IAD-GVDDPEHLVNSASPSLCIDPVGATPVLKSPTLSVSPTIRNSRKSLKTSELSTASQK 640 650 660 670 680 690 300 310 320 330 MTE17. -----N-VTES---SSTGNRK------PLS-------P--TDSLAASLQRGLNIID--CH : :::. : . ..: :: : :. ::.::..:..... : ATFCA0 DSEGENLVTEAADPSPATSKKMNNCSSALSTQKSKVFPVRTERLASSLHKGIKLLESYC- 700 710 720 730 740 750 340 350 360 370 380 MTE17. QRSSLSNRSSVSFSFGHLSLK-PCD-EADDNLS---ASVKLLQ-KDRPKEGGSSILLCLS : :. . ::. ::: : : : : . ..: :.:. . : .: ... .:: . ATFCA0 Q-STAQRRSTYRFSF-----KAP-DSEPSTSISKADAGVQTIPGADAISEENTKEFLCCK 760 770 780 790 800 390 400 410 MTE17. C--RQKLDQEAQGGY----------------------KAIEE--A-CVD-EKHLKNMCVE : :...: . .: . ::.:. : . : :...:.. ATFCA0 CKCREQFDAQQMGDMPNLQLVPVDNSEVAEKSKNQVPKAVEKVLAGSIRREMALEEFCTK 810 820 830 840 850 860 420 430 440 450 MTE17. QATKIEQLTYQLDEYKK----NAL--Q-ESSKVT--QQLM-----KSD--DGE-----DE ::..: ::. ...::. ::. : . .:. ..:: : : : : : ATFCA0 QASEITQLNRLVQQYKHERECNAIIGQTREDKIIRLESLMDGVLSKEDFLDEEFASLLHE 870 880 890 900 910 920 460 470 480 490 500 MTE17. TEVVKETYETN----------QRSEE----FGKVRIDLSEKEALLKEIAELKSKLQ---- ...:. :... .:..: : . :..:.:.::.:: .:: .:: ATFCA0 HKLLKDMYQNHPEVLKTKIELERTQEEVENFKNFYGDMGEREVLLEEIQDLKLQLQCYID 930 940 950 960 970 980 510 520 530 540 550 MTE17. PT-KSTDNVRSSLLLR-SFQMRKSIDFTKNTENNS-E-ALEEERERWTEMESEWISLTDD :. ::. ... ::. :.: .. .....: : .::.:: ::: :..::::... ATFCA0 PSLKSA--LKTCTLLKLSYQA-PPVNAIPESQDESLEKTLEQERLCWTEAETKWISLSEE 990 1000 1010 1020 1030 1040 560 570 580 590 600 610 MTE17. LRMDIDSHR----RHAEDLEIELKKEKMATEELNDALSRAMLGHSRFIEQYTELQEKYDE :: .... . .. ..:::: :. :::..:.. :: ::.:..:::..:.::. . ATFCA0 LRTELEASKALINKQKHELEIE-KR---CGEELKEAMQMAMEGHARMLEQYADLEEKHMQ 1050 1060 1070 1080 1090 620 630 640 650 660 670 MTE17. LDERHSVTMAGIVDVKKAAAKAALKGRHGKRFAKAFSAELTAIRAEKEKEREFLKKENKG : :: . :: :::::::.:...: .. :: .:..::..:...::::::..:. :::. ATFCA0 LLARHRRIQDGIDDVKKAAARAGVRGAES-RFINALAAEISALKVEKEKERQYLRDENKS 1100 1110 1120 1130 1140 1150 680 690 700 710 720 730 MTE17. LKIQLRDTVEAVQAAGELLVRLREAEQAVQSSEERFGIMEEENDKLK--QQMEKLKSKHK :. :::::.::.::::::::::.:::... ...: :. : . . .:..:::.::. ATFCA0 LQTQLRDTAEAIQAAGELLVRLKEAEEGLTVAQKR--AMDAEYEAAEAYRQIDKLKKKHE 1160 1170 1180 1190 1200 1210 740 750 760 770 780 MTE17. TEMSTMKQYLAESKLPGSALEAWFKENE-QEEEEEHVSSSEHRTGVVSYDNYTDDQAWRS .:..:..: : .: : .. :: . . .. : : : : ...: ::. ATFCA0 NEINTLNQ-L----VPQSHIH-----NECSTKCDQAVEPS-----V----NASSEQQWRD 1220 1230 1240 1250 790 800 MTE17. EFGAIYQDHDHHY :: .:. ATFCA0 EFEPLYKKETEFSNLAEPSWFSGYDRLTHKLYSVVPCISSPSATDLDQEEEESETCAICL 1260 1270 1280 1290 1300 1310 ATFCA0 ENMSRSENCCQMPYCKLITAVSSMHKKYTRGCHVLTVVYFLIRHVVPSFTYFLTFFSQYL 1320 1330 1340 1350 1360 1370 ATFCA0 VSEPTDFVKVGERGHVESLKTFSFTWFIFLKASILLYLQNFPCQEVERHNKPEVELKYVS 1380 1390 1400 1410 1420 1430 ATFCA0 FSQEDACENGVLICRNEAEKCLIETSINSLRISLKVKQADELENILTKKFLRFLSMRAEA 1440 1450 1460 1470 1480 1490 ATFCA0 FQVLRRKPVQAFFRFRMIDSLIKKNDNNVVVNTKMTTIETGQKTQKSSPSGSGTTPTGTL 1500 1510 1520 1530 1540 1550 ATFCA0 KQSSASFKRWGRRHPFVRYGLPMISLTVFGALGLGQLLQGSKDIAKVKDDQEWEIIETRK 1560 1570 1580 1590 1600 1610 ATFCA0 ALSRTGPVDAYKPKNTSIEDELKAMQEKVDINTYEYKKIPKLNESKSS 1620 1630 1640 1650 1660 Library scan: 0:00:00 total CPU time: 0:00:01