SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >MSN9.P2 (Universal genetic code) : 345 aa
 vs  library
 searching i49127 library

    594 residues in     1 sequences
The best scores are:                              s-w
I49127, 594 bases, 881 checksum.                   (594) 515

>>I49127, 594 bases, 881 checksum.                   (594 aa)
Smith-Waterman score: 515;   31.140% identity in 456 aa overlap

I49127 MQSAPLEQPAKRPRCDGSPRTPPSTPPATANLSADDDFQNTDLRTWEPEDVCSFLENRGF
               10        20        30        40        50        60

I49127 REKKVLDIFRDNKIAGSFLPFLDEDRLEDLGVSSLEERKKMIECIQQLSQSRIDLMKVFN
               70        80        90       100       110       120

                          10        20                30           
MSN9.P            LCLKFIDTEQFQRLRELKQLG--ETV------QRLKTFQGM--------
                  : ...::: :::::: .::::    :      .:..   :.        
I49127 DPIHGHIEFHPLLIRIIDTPQFQRLRYIKQLGGGYYVFPGASHNRFEHSLGVGYLAGCLV
              130       140       150       160       170       180

                    40        50        60        70             80
MSN9.P --------ELGIDNHDLQTVRLAGLLHDIGHGPFSHMFEPLLYMPVLVCR-----SHELM
               :: :...:.  :..::: ::.:::::::::.   ..:    :     .::  
I49127 RALAEKQPELQISERDILCVQIAGLCHDLGHGPFSHMFDGR-FIPR--ARPEKKWKHEQG
              190       200       210       220          230       

               90                  100                        110  
MSN9.P SINMIDYIVDTHHIDV-----------DAKMLK-RV---------------KGN-AEKRF
       ::.:....:..... .           :  ..: ..               ::  : : :
I49127 SIEMFEHLVNSNELKLVMKNYGLVPEEDITFIKEQIMGPPITPVKDSLWPYKGRPATKSF
       240       250       260       270       280       290       

            120       130                       140                
MSN9.P LYDIVANGRNGIDVDKLTEPMR------VIDN----------EIC---YPAKE---Y-RT
       ::.::.: ::::::::     :      . .:          .::   : .::   : : 
I49127 LYEIVSNKRNGIDVDKWDYFARDCHHLGIQNNFDYKRFIKFARICEVEYKVKEDKTYIRK
       300       310       320       330       340       350       

     150                    160       170         180       190    
MSN9.P V-H-----K-------LFATRADLCGTVYMHPKKMA--IELMIVDAMVKANNVLEI----
       : :     :       .: ::  :   .:.:  :..  :..::.::..::.  .::    
I49127 VKHICSREKEVGNLYDMFHTRNCLHRRAYQH--KISNLIDIMITDAFLKADPYVEITGTA
       360       370       380         390       400       410     

                    200       210       220        230       240   
MSN9.P ------SSMINDPSQYWKLDDTILKTIERSPDPELAEAKELILR-LSRRHLYQKQTSLTL
             :. :.:   . :: :.:.  . .: ::.:.::.  ::: .  :.:: :  . : 
I49127 GKKFRISTAIDDMEAFTKLTDNIFLEVLHSTDPQLSEAQS-ILRNIECRNLY-KYLGETQ
         420       430       440       450        460        470   

            250          260          270                   280    
MSN9.P -KEEDIAVTNV-KI--DLARGR-EN-P-LECSNQ-LIL-VL--DF-------FS-INFYK
        :.: :   .  ..  ..:... :. : .: . . .:. :.  :.       .. ..:: 
I49127 PKREKIRKEEYERLPQEVAKAKPEKAPDVELKAEDFIVDVINVDYGMEDKNPIDRVHFYC
           480       490       500       510       520       530   

          290       300       310       320         330       340  
MSN9.P DYNSAEKFVIPEDRVSHLLPTTYQEMIVRVYAKKPE--LVEAVSEAFENFQMRTYGIKAQ
         :: .   : ...::.:::  . :...::: :: .   ..:  ::.             
I49127 KSNSKQAVRINKEQVSQLLPEKFAEQLIRVYCKKKDGKSLDA-REALCSVVCAQGLHQAT
           540       550       560       570        580       590  

          
MSN9.P VLM
          
I49127 GW 
          

Library scan:  0:00:00  total CPU time:  0:00:01