SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >MSN9.P1 (Universal genetic code) : 144 aa
 vs  library
 searching atfca49 library

    576 residues in     1 sequences
The best scores are:                              s-w
ATFCA49, 576 bases, 1D3D checksum.                 (576) 646

>>ATFCA49, 576 bases, 1D3D checksum.                 (576 aa)
Smith-Waterman score: 646;   67.879% identity in 165 aa overlap

ATFCA4 MREETVSWKYFKRDVVPFTAMIAIECTTVGSSILYKAATLRGFSFYVFVFYAYVGATLVL
               10        20        30        40        50        60

                                            10         20        30
MSN9.P                              LRMEQVTLRSSANLA-IIGKIVSISAALVVV
                                    : :::: :::::. : ::: :::::.:::.:
ATFCA4 LLLSLIFGRSRSLPTAKSSLFFKIFLLALLGMEQVMLRSSATQAKIIGTIVSISGALVIV
               70        80        90       100       110       120

               40        50                    60               70 
MSN9.P LYKGRKVLDAASFTSFESSWIIGGLLI-T----------S-Q----YLL---VFQGVFDS
       :::: :.: :::::::::::::::::. :          : :    . :   ...:.::.
ATFCA4 LYKGPKLLVAASFTSFESSWIIGGLLLGTVCLLVEKDLNSWQLKPGFSLASVIYSGLFDT
              130       140       150       160       170       180

              80        90       100       110        120       130
MSN9.P SLCSVIHTWGLHLNGPVYVSLFKPLFIAVAVVMGAIFLGDALHL-SVIGSMILSFGFYTV
       :: :::::::::..::::.:::::: ::.::.:.::::::.::: :::::.:::::::::
ATFCA4 SLGSVIHTWGLHVKGPVYISLFKPLSIAIAVAMAAIFLGDTLHLGSVIGSVILSFGFYTV
              190       200       210       220       230       240

              140                                                  
MSN9.P IWGKAREDAAKIAS                                              
       ::::::::..: .:                                              
ATFCA4 IWGKAREDSTKTVSSRSFDLPDELLQVLPSDPFEQLDVARKITSIALSTRVSALESESSD
              250       260       270       280       290       300

ATFCA4 LRELLAEKEKEFEELQSHVESLEASLSDAFHKLSLADGEKVRPDPENLIRENASLSNTVK
              310       320       330       340       350       360

ATFCA4 RLQRDVSKLEGFRKTLMMSLQDDDQNAGTTQIIAKPTPNDDDTPFQPSRHSSIQSQQASE
              370       380       390       400       410       420

ATFCA4 AIEPAATDNENDGIFVLCYIVAPKPSLSASLPLVSQTTTPRLTPPGSPPILSASGTPKTT
              430       440       450       460       470       480

ATFCA4 SRPISPRRHSVSFATTRGMFDDTRSSISISEPGSQTARTRVDGKEFFRQVRSRLSYEQFG
              490       500       510       520       530       540

ATFCA4 AFLGNVKDLNAHKQTREVRRILSQSSLPSFDSKLGF
              550       560       570      

Library scan:  0:00:00  total CPU time:  0:00:00