SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >MSN9.9 (Universal genetic code) : 245 aa
 vs  library
 searching atfca49 library

    576 residues in     1 sequences
The best scores are:                              s-w
ATFCA49, 576 bases, 1D3D checksum.                 (576) 514

>>ATFCA49, 576 bases, 1D3D checksum.                 (576 aa)
Smith-Waterman score: 514;   40.138% identity in 289 aa overlap

                   10        20        30        40         50     
MSN9.9     MVHGRLCNRDGWILTAMVVTEFSNVGVNTLVKAATSKGLSPFVVLV-YSYTFGSLL
            :  .  .::   .:::.. : ..:: . : :::: .:.: : :.: :.:. :. :
ATFCA4 MREETVSWKYFKRDVVPFTAMIAIECTTVGSSILYKAATLRGFS-FYVFVFYAYV-GATL
               10        20        30        40         50         

          60        70        80        90        100       110    
MSN9.9 LLPLTFFSFRSAFQILGYNGIKYSSPTLSSAMSNVNPAFT-FILAVVFRMENISLGKKSS
       .: : ..:.     :.: .  . : :: .:..      :  :.::..  ::.. :  .::
ATFCA4 VL-L-LLSL-----IFGRS--R-SLPTAKSSL-----FFKIFLLALL-GMEQVML--RSS
       60               70           80             90          100

            120       130       140             150                
MSN9.9 V--AKVLGTILSIIGALVVTLYHGPMLM-----SS-HSDWIIGG---G---LLA---L--
       .  ::..:::.:: ::::..::.:: :.     .: .:.:::::   :   ::.   :  
ATFCA4 ATQAKIIGTIVSISGALVIVLYKGPKLLVAASFTSFESSWIIGGLLLGTVCLLVEKDLNS
              110       120       130       140       150       160

              160                        170       180       190   
MSN9.9 -Q----YILVSVSY--L-------VM--------GPVYLSMFKPLSILIAAVSTFIFLGE
        :    . :.:: :  :       :.        ::::.:.:::::: ::.. . ::::.
ATFCA4 WQLKPGFSLASVIYSGLFDTSLGSVIHTWGLHVKGPVYISLFKPLSIAIAVAMAAIFLGD
              170       180       190       200       210       220

           200       210       220       230         240           
MSN9.9 SLYLGSVMGGILISIGFYMVLWGKAKEDKVDIIGAIESSPSHNAP--LLDNFKS      
       .:.::::.:....:.::: :.::::.::..  .    :: : . :  ::. . :      
ATFCA4 TLHLGSVIGSVILSFGFYTVIWGKAREDSTKTV----SSRSFDLPDELLQVLPSDPFEQL
              230       240       250           260       270      

ATFCA4 DVARKITSIALSTRVSALESESSDLRELLAEKEKEFEELQSHVESLEASLSDAFHKLSLA
        280       290       300       310       320       330      

ATFCA4 DGEKVRPDPENLIRENASLSNTVKRLQRDVSKLEGFRKTLMMSLQDDDQNAGTTQIIAKP
        340       350       360       370       380       390      

ATFCA4 TPNDDDTPFQPSRHSSIQSQQASEAIEPAATDNENDGIFVLCYIVAPKPSLSASLPLVSQ
        400       410       420       430       440       450      

ATFCA4 TTTPRLTPPGSPPILSASGTPKTTSRPISPRRHSVSFATTRGMFDDTRSSISISEPGSQT
        460       470       480       490       500       510      

ATFCA4 ARTRVDGKEFFRQVRSRLSYEQFGAFLGNVKDLNAHKQTREVRRILSQSSLPSFDSKLGF
        520       530       540       550       560       570      

Library scan:  0:00:00  total CPU time:  0:00:00