SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >MSN9.12 (Universal genetic code) : 376 aa
 vs  library
 searching f19p1920 library

    381 residues in     1 sequences
The best scores are:                              s-w
F19P1920, 381 bases, 1A34 checksum.                (381) 484

>>F19P1920, 381 bases, 1A34 checksum.                (381 aa)
Smith-Waterman score: 484;   29.730% identity in 407 aa overlap

               10        20        30                40        50  
MSN9.1 MSWVRFTIEQKDGNFAYPPPFYKDPILSPPSPP---P--P---SSGNRISPAVLFVIVI-
                    :...:::    :   :::     :  :   :::. . : .: . :: 
F19P19   MDLTDRRNPFNNLVFPPP---PP---PPSTTFTSPIFPRTSSSGTNF-P-ILAIAVIG
                 10           20           30        40          50

               60        70             80        90       100     
MSN9.1 -LAVLFFISGLLHLLVRFLIK-----HPSATASSRSNRFPEISTSDALQRQLQQLF--HL
        ::. :.   :.   . :.::     : .     :  :     .::  :  :. ..  : 
F19P19 ILATAFL---LVSYYI-FVIKCCLNWH-QIDIFRRRRR-----SSD--QNPLM-IYSPHE
                  60         70         80               90        

           110       120         130       140       150       160 
MSN9.1 NDSGLDQAFIDALPVFHYK--EIVGSAGGGGGNGAAQEPFDCAVCLCEFSEKDKLRLLPM
        . :::.. : :.:::..:  ..:  ::    .  .::   :.::: ::.: .:::..: 
F19P19 VNRGLDESAIRAIPVFKFKKRDVV--AGEEDQSKNSQE---CSVCLNEFQEDEKLRIIPN
       100       110       120         130          140       150  

             170       180            190                       200
MSN9.1 CSHAFHLNCIDTWLQSNSTCPLCRGTL-----FS------PGFSMEN----------PMF
       : :.::..::: :::.:..::::: ..     :.      :.   ::          : .
F19P19 CCHVFHIDCIDIWLQGNANCPLCRTSVSCEASFTLDLISAPSSPRENSPHSRNRNLEPGL
            160       170       180       190       200       210  

                  210           220                   230          
MSN9.1 ----DFDDIREDEEGVTENG----SQKTMEI---QEIVV--E-------KGV--LPVRLG
           : ::.   : :.. ::    : .....   :: :.  :       :.:  ::...:
F19P19 VLGGD-DDFVVIELGAS-NGNNRESVRNIDFLTEQERVTSNEVSTGNSPKSVSPLPIKFG
             220        230       240       250       260       270

               240           250         260       270          280
MSN9.1 ---------KFKRLDNVGN----GQGQDVVAG--GETSSSNLDARRCFSMGS---YQYIL
                ::... ..:.     .:.:   :  :: .      :: .:: :    :  :
F19P19 NRGMYKKERKFHKVTSMGDECIDTRGKD---GHFGEIQP----IRRSISMDSSVDRQLYL
              280       290          300           310       320   

              290       300       310           320       330      
MSN9.1 GNSELKVPFANDRLPRLKPQDKESEQTGNSSSEDNKK----INTVAKGESFSVSKIWLWP
       . .: ..   : ..: .  . ..: ..:...:.  :.    ...   ..: :.  ..: :
F19P19 AVQE-EISRRNRQIP-VAGDGEDSSSSGGGNSRVMKRCFFSFGSSRTSKSSSILPVYLEP
            330        340       350       360       370       380 

        340       350       360       370      
MSN9.1 KKDKFSSDAQRRLPSSSLNVDDLPKLPWMEEHKKLENDGR

Library scan:  0:00:00  total CPU time:  0:00:00