SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >MSN9.11 (Universal genetic code) : 346 aa
 vs  library
 searching atfca49 library

    576 residues in     1 sequences
The best scores are:                              s-w
ATFCA49, 576 bases, 1D3D checksum.                 (576)1046

>>ATFCA49, 576 bases, 1D3D checksum.                 (576 aa)
Smith-Waterman score: 1046;   55.491% identity in 346 aa overlap

               10        20        30        40        50        60
MSN9.1 MREAGEEKVAWKYFTRDVVPFAAMFAVECATVGSNTLFKAATLRGLSFYVFVFYSYIVST
       ::   :: :.:::: ::::::.::.:.::.::::. :.:::::::.::::::::.:. .:
ATFCA4 MR---EETVSWKYFKRDVVPFTAMIAIECTTVGSSILYKAATLRGFSFYVFVFYAYVGAT
                  10        20        30        40        50       

               70        80        90       100        110         
MSN9.1 LLLLPLSVIFGRFMSQIAGCKGIAYSSPTLASAISNLTPAFT-FTLAVIFRMEQVRLRSS
       :.:: ::.::::  :.         : ::   : :.:   :  : ::..  :::: ::::
ATFCA4 LVLLLLSLIFGR--SR---------SLPT---AKSSLF--FKIFLLALL-GMEQVMLRSS
        60          70                    80          90        100

     120       130       140       150       160       170         
MSN9.1 ATQAKIIGAILSISGALVVVLYKGPQVLASASFTTVLPTVTLHQQLTSIESSWIIGGLLL
       ::::::::.:.:::::::.::::::..:..::::             :.:::::::::::
ATFCA4 ATQAKIIGTIVSISGALVIVLYKGPKLLVAASFT-------------SFESSWIIGGLLL
              110       120       130                    140       

     180       190       200       210       220       230         
MSN9.1 ASQYFLISVWYILQTRVMEVYPEEITVVFFYNLFATLISVPVCLFAESNLTSWVLKPDIS
       ..                                       :::..:..:.:: ::: .:
ATFCA4 GT---------------------------------------VCLLVEKDLNSWQLKPGFS
                                              150       160        

     240        250       260       270       280       290        
MSN9.1 LAAIIYSGVF-VSLFSALTHTWGLHLKGPVYISLFRPLSIAIAVAMGAIFLGDALHLGSV
       ::..::::.: .:: :.. ::::::.:::::::::.::::::::::.::::::.::::::
ATFCA4 LASVIYSGLFDTSLGSVI-HTWGLHVKGPVYISLFKPLSIAIAVAMAAIFLGDTLHLGSV
      170       180        190       200       210       220       

      300       310       320        330       340                 
MSN9.1 IGSMILCIGFYTVIWGKAREDTIKTVAG-SEQSPLLLTHIIEDGAFPLS           
       :::.:: .:::::::::::::. :::.. : . :  : ... .  :              
ATFCA4 IGSVILSFGFYTVIWGKAREDSTKTVSSRSFDLPDELLQVLPSDPFEQLDVARKITSIAL
       230       240       250       260       270       280       

ATFCA4 STRVSALESESSDLRELLAEKEKEFEELQSHVESLEASLSDAFHKLSLADGEKVRPDPEN
       290       300       310       320       330       340       

ATFCA4 LIRENASLSNTVKRLQRDVSKLEGFRKTLMMSLQDDDQNAGTTQIIAKPTPNDDDTPFQP
       350       360       370       380       390       400       

ATFCA4 SRHSSIQSQQASEAIEPAATDNENDGIFVLCYIVAPKPSLSASLPLVSQTTTPRLTPPGS
       410       420       430       440       450       460       

ATFCA4 PPILSASGTPKTTSRPISPRRHSVSFATTRGMFDDTRSSISISEPGSQTARTRVDGKEFF
       470       480       490       500       510       520       

ATFCA4 RQVRSRLSYEQFGAFLGNVKDLNAHKQTREVRRILSQSSLPSFDSKLGF
       530       540       550       560       570      

Library scan:  0:00:00  total CPU time:  0:00:00