SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >MSN9.10 (Universal genetic code) : 326 aa
 vs  library
 searching atfca49 library

    576 residues in     1 sequences
The best scores are:                              s-w
ATFCA49, 576 bases, 1D3D checksum.                 (576)1197

>>ATFCA49, 576 bases, 1D3D checksum.                 (576 aa)
Smith-Waterman score: 1197;   64.151% identity in 318 aa overlap

               10        20        30        40        50        60
MSN9.1 MTRGAGGETVAWSYFCRDVVPFTAMVAVECVTVGSNTLFKAATLRGLSFYVFVFYTYVVA
              :::.:.:: :::::::::.:.::.::::. :.:::::::.::::::::.:: :
ATFCA4     MREETVSWKYFKRDVVPFTAMIAIECTTVGSSILYKAATLRGFSFYVFVFYAYVGA
                   10        20        30        40        50      

               70        80        90       100       110       120
MSN9.1 TLVLLPLSLIFGRSKRLPSAKTPVFFNIFLLALVGMEQIVLRSSATQAKIIGTIVSISGA
       ::::: ::::::::. ::.::. .::.::::::.::::..::::::::::::::::::::
ATFCA4 TLVLLLLSLIFGRSRSLPTAKSSLFFKIFLLALLGMEQVMLRSSATQAKIIGTIVSISGA
         60        70        80        90       100       110      

              130       140       150       160       170       180
MSN9.1 LVVILYKGPKVLTDASLTPPSPTISLYQHLTSFDSSWIIGGLLLATQYLLVSTRVMELYP
       ::..::::::.:. ::.:             ::.::::::::::.:              
ATFCA4 LVIVLYKGPKLLVAASFT-------------SFESSWIIGGLLLGT--------------
        120       130                    140                       

              190       200       210       220       230       240
MSN9.1 EEITVVFLYNLCATLISAPVCLFAEKDLNSFILKPGVSLASVMYSGGLVSSFGSVIHTWG
                          :::..::::::. :::: :::::.::: . .:.::::::::
ATFCA4 -------------------VCLLVEKDLNSWQLKPGFSLASVIYSGLFDTSLGSVIHTWG
                        150       160       170       180       190

              250       260       270       280       290       300
MSN9.1 LHLKGPVYISLFKPLSIVIAVAMGVMFLGDALYLGSVIGSLILSLGFYTVIWGKAREDSI
       ::.::::::::::::::.:::::...::::.:.:::::::.:::.:::::::::::::: 
ATFCA4 LHVKGPVYISLFKPLSIAIAVAMAAIFLGDTLHLGSVIGSVILSFGFYTVIWGKAREDST
              200       210       220       230       240       250

               310            320                                  
MSN9.1 KTVAG-TEQSP--LL---PSHTIEEEASLSCD                            
       :::.. . . :  ::   ::  .:.                                   
ATFCA4 KTVSSRSFDLPDELLQVLPSDPFEQLDVARKITSIALSTRVSALESESSDLRELLAEKEK
              260       270       280       290       300       310

ATFCA4 EFEELQSHVESLEASLSDAFHKLSLADGEKVRPDPENLIRENASLSNTVKRLQRDVSKLE
              320       330       340       350       360       370

ATFCA4 GFRKTLMMSLQDDDQNAGTTQIIAKPTPNDDDTPFQPSRHSSIQSQQASEAIEPAATDNE
              380       390       400       410       420       430

ATFCA4 NDGIFVLCYIVAPKPSLSASLPLVSQTTTPRLTPPGSPPILSASGTPKTTSRPISPRRHS
              440       450       460       470       480       490

ATFCA4 VSFATTRGMFDDTRSSISISEPGSQTARTRVDGKEFFRQVRSRLSYEQFGAFLGNVKDLN
              500       510       520       530       540       550

ATFCA4 AHKQTREVRRILSQSSLPSFDSKLGF
              560       570      

Library scan:  0:00:00  total CPU time:  0:00:00