Gene organization of MSJ1 (83594 bp)
Chromosome V 24-26 Mb   FTP   Reference   Kazusa Status  
Gene organization of MSJ1
figure legend

potential protein genes

identifier direction position No. of
exon
No. of
EST
Definition of the most similar sequence

MSJ1.1
+
1947..2985 3 0 giantin
MSJ1.2
-
8883..10148 3 0 alternative oxidase AOMI 1
MSJ1.3
+
20620..22030 5 0 hypothetical protein YOR197w
MSJ1.4
+
31693..35499 1 1 cosmid T08A11
MSJ1.5
-
36117..38195 4 0 Sequence 1 from Patent WO9534654
MSJ1.6
-
39282..41426 4 2 Sequence 1 from Patent WO9534654
MSJ1.7
+
43243..44253 3 1 GTP cyclohydrolase II (EC 3.5.4.25) / 3,4-dihydroxy-2-butanone 4- phosphate synthase
MSJ1.8
+
44572..45571 3 2 GTP cyclohydrolase II (EC 3.5.4.25)
MSJ1.9
-
48034..50223 1 0 Sequence of BAC F21M12 from chromosome 1
MSJ1.10
+
52355..55006 6 1 chromosome II BAC T06B20 genomic sequence
MSJ1.11
-
55677..56720 1 2 hypothetical 118.6 kD protein c29e6.03c in chromosome I
MSJ1.12
-
59597..60774 5 5 immunophilin
MSJ1.13
+
64048..65812 6 2 beta-ureidopropionase (EC 3.5.1.6)
MSJ1.14
+
66252..67805 4 1 fructose-1,6-bisphosphatase, chloroplast (EC 3.1.3.11)
MSJ1.15
+
68226..70328 3 0 hnRNP X protein
MSJ1.16
+
70681..71460 3 0 T3 receptor-associating cofactor-1 [human, fetal liver, mRNA, 2930 nt]
MSJ1.17
-
75708..79758 5 6 Sequence of BAC F21M12 from chromosome 1


potential exons

identifier direction position No. of
exon
No. of
EST
Definition of the most similar sequence

MSJ1.P1
-
7925..8008 1 0 chloroplast 30 kD ribonucleoprotein precursor
MSJ1.P2
-
62964..63107 1 0 K homologue, GrpE homologue, DnaJ homologue and DafA
MSJ1.P3
+
15156..15302 1 1 PP1M M110=protein phosphatase 1M 110 kda regulatory subunit [rats, aorta, mRNA, 3300 nt]
MSJ1.P5
+
81200..83594 5 0 cosmid B1764


transcribed regions

identifier direction position Definition of the most similar sequence

MSJ1.T1
+
6087..6326 clone PAP631; 3' end
MSJ1.T2
-
6724..7275 clone 106B12T7
MSJ1.T3
+,-,-,-,-
28736..29938 clone 138J18T7
clone 72B6T7
clone 163H1T7
clone 151G24T7
clone 186J19T7
clone VBVAC07
clone 124K21T7
clone B85XP
clone 186E20T7
clone F2B9T7
clone 86G11T7
Lambda-PRL2 cDNA clone 314A7T7
MSJ1.T4
+
46732..47333 clone FAFD25
clone TAT1A4, 5' end
clone 141M1T7
clone TAI344
clone TASG047
clone YAP061T
clone 193H9T7
MSJ1.T5
+
50395..50740 clone FAFJ56
MSJ1.T6
+
74196..74288 clone 160E8T7
MSJ1.T7
+
74408..74594 clone 163E7T7
clone OAO81; 5' end
OS043 NaCl-treated Arabidopsis subtraction library Arabidopsisthaliana cDNA 5'
clone 208C14T7
MSJ1.T8
-,+
74866..75149 CD4-13 cDNA clone E10A5T7
clone OAO81; 3' end


Reference
Structural Analysis of Arabidopsis thaliana Chromosome 5. III. Sequence Features of the Regions of 1,191,918 bp Covered by Seventeen Physically assigned P1 Clones. (1997) Yasukazu Nakamura, Shusei Sato, Takakazu Kaneko, Hirokazu Kotani, Erika Asamizu, Nobuyuki Miyajima, and Satoshi Tabata DNA Research, 4, 401-414
o Kazusa Status