SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >MSI17.P1 (Universal genetic code) : 137 aa
 vs  library
 searching athta25 library

    199 residues in     1 sequences
The best scores are:                              s-w
ATHTA25, 199 bases, 697 checksum.                  (199) 601

>>ATHTA25, 199 bases, 697 checksum.                  (199 aa)
Smith-Waterman score: 601;   62.774% identity in 137 aa overlap

                                                                   
MSI17.                                                        RMTDF
                                                              ::..:
ATHTA2 DPGPDGMTALFYQRFWDLTGPDLVKVVQNFHSSASFDERLNETNICLIPKIDRPRRMAEF
               10        20        30        40        50        60

          10        20        30        40        50        60     
MSI17. RPISPCNVIYKIIGKLLANRLKQILPSLISESQAAFVKGRLISDNILIAHELLHALSSNN
       :::: ::: ::.:.:.:..:::.:::.::::.:.::: ::::.::::.:.: .::: .: 
ATHTA2 RPISLCNVSYKVISKVLSSRLKKILPDLISETQSAFVAGRLITDNILVAQENFHALRTNP
               70        80        90       100       110       120

          70        80        90       100       110       120     
MSI17. KCSEEFIAIKTNISKAYDRVEWPFLENAMRRLGFAESWIQLIMECVKSVRYQVLINGTPH
        : ..:.::::..:::: :::: ::.  : ..:::..:..::: ::.:: :.::.::.:.
ATHTA2 ACRKKFMAIKTDMSKAYGRVEWSFLRALMLKMGFAQKWVDLIMFCVSSVSYKVLLNGAPR
              130       140       150       160       170       180

         130              
MSI17. GEITPTRGLRQG       
       : : ::::.:::       
ATHTA2 GFIKPTRGIRQGYPLRPNS
              190         

Library scan:  0:00:00  total CPU time:  0:00:00