SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >MSG15.P3 (Universal genetic code) : 41 aa
 vs  library
 searching af012128 library

    391 residues in     1 sequences
The best scores are:                              s-w
AF012128, 391 bases, 14C7 checksum.                (391)  79

>>AF012128, 391 bases, 14C7 checksum.                (391 aa)
Smith-Waterman score: 79;   31.707% identity in 41 aa overlap

AF0121 MEPLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGI
               10        20        30        40        50        60

                                                           10      
MSG15.                                             LVPKYLNHSSMLKHHF
                                                   ..:. :..   : ...
AF0121 TLEEFDRLSFDMILMSPPCQPFTRIGRQGDMTDSRTNSFLHILDILPR-LQK---LPKYI
               70        80        90       100        110         

         20        30        40                                    
MSG15. LMENMKGYIWLNLIDMPKETMKNCG                                   
       :.::.::.   .  :.  .:..:::                                   
AF0121 LLENVKGFEVSSTRDLLIQTIENCGFQYQEFLLSPTSLGIPNSRLRYFLIAKLQSEPLPF
        120       130       140       150       160       170      

AF0121 QAPGQVLMEFPKIESVHPQKYAMDVENKIQEKNVEPNISFDGSIQCSGKDAILFKLETAE
        180       190       200       210       220       230      

AF0121 EIHRKNQQDSDLSVKMLKDFLEDDTDVNQYLLPPKSLLRYALLLDIVQPTCRRSVCFTKG
        240       250       260       270       280       290      

AF0121 YGSYIEGTGSVLQTAEDVQVENIYKSLTNLSQEEQITKLLILKLRYFTPKEIANLLGFPP
        300       310       320       330       340       350      

AF0121 EFGFPEKITVKQRYRLLGNSLNVHVVAKLIKILYE
        360       370       380       390 

Library scan:  0:00:00  total CPU time:  0:00:00