SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >MSG15.P2 (Universal genetic code) : 187 aa
 vs  library
 searching boy123211 library

   1131 residues in     1 sequences
The best scores are:                              s-w
BOY123211, 1131 bases, 1228 checksum.              (1131) 435

>>BOY123211, 1131 bases, 1228 checksum.              (1131 aa)
Smith-Waterman score: 435;   38.265% identity in 196 aa overlap

                                              10        20         
MSG15.                                LTSSNYHIWLPLMTLFLRVKNKIGFVDGT
                                      : .:::  :   : . : .::::::::::
BOY123 MVIPPESMDPNQSPLFMHNADHPGLQLISLKLDGSNYDDWNAAMKIALDAKNKIGFVDGT
               10        20        30        40        50        60

      30        40        50        60        70        80         
MSG15. LPKPPANNQTSAMWSCCNSMVMSWITSSVSDDIRKSIIYHNTAQAMWSALKDRYHMLNLS
       : .: ... :  .:: ::::: ::. .::: .: .::.  : :  .:  :. :.:: :: 
BOY123 LTRPDTSDPTFRLWSRCNSMVKSWLLNSVSPQIYRSILRLNDAADIWRDLHGRFHMTNLP
               70        80        90       100       110       120

      90        100         110       120        130        140    
MSG15. DQ-DTVMELQAARYGYQDM-DF-TRFITLWNELKYY-KPPMVCNCGGAKEALEK-YEQEK
          . ..:.:  . : ... :. : . :::..:.   .:   : ::.: : :.:  .. :
BOY123 RTFNLTQEIQDLKQGSMSLSDYYTTLKTLWDNLESVDEPDTPCVCGNA-EKLQKKVDRAK
              130       140       150       160        170         

          150           160       170       180                    
MSG15. CLTQFLHGVKQSH----RQTIDMILTKEPLPDVYWALKCLECEESRR             
        ...:: :...:.    :: : :   :. ::..  . . :. ..:..             
BOY123 -IVKFLAGLNDSYAIIRRQII-M---KKVLPSLVEVYNILDQDDSQKGFSTAITPAAFNV
      180       190        200          210       220       230    

BOY123 SENVPPPMAEAGICYVQTGPNKGRPICSFCNRVGHIAERCYKKHGFPPGFVSKYKSQSSG
          240       250       260       270       280       290    

BOY123 DRLQKPKQVAAQVSFSPPNSGQSPMTMDHLVGNHSKEQLQQFIALFSSQLPNVTMGSNEA
          300       310       320       330       340       350    

BOY123 SSSKQPMDNSGISFNPTTLVFIGLLTVSRHTLANETWIIDSGATHHVCHDRSMYTSIDIT
          360       370       380       390       400       410    

BOY123 TTSNVNLPNGMIVKISGVGIVQLNEHITLHNVLYIPEFRLNLLSISSLTSDIGSQVIFDV
          420       430       440       450       460       470    

BOY123 SSCAIQDPTKGWTIGQGRRVANLYVLDVKSSPMKINAVVDISLWHKRLGHPSYTRLDKIS
          480       490       500       510       520       530    

BOY123 EALGTTKHKNKGDAHCHVCHLAKQKKLSYSSQNHICTASFQLLHVDVWGPFSVETLEGYK
          540       550       560       570       580       590    

BOY123 YFLTIVDDHSRATWIYLLQSKSDVLHIFPTFVNQIETQYNTKIKSVRRDNAPELSFTELF
          600       610       620       630       640       650    

BOY123 KEKGIVSYHSCPETLEQNSVLERKHQHLLNVARALMFQSQVPLQYWGDCVLTAAFLINRT
          660       670       680       690       700       710    

BOY123 PSPLLANKSPYEVLMGKAPQYDQLRTFGCLCYGSTSPKQRHKFMPRSRACVFLGYPSGYK
          720       730       740       750       760       770    

BOY123 GYKLLDLESNKIYISRNVTFHEDIFPMAKHQKMDESSLHFFPPKVTVPSAPSPNISSSPF
          780       790       800       810       820       830    

BOY123 STLSPQISKRQRTVPAHLKDFHCYSVHDSAYPISSTLSYSQISSHHLAYINSITNIPIPQ
          840       850       860       870       880       890    

BOY123 SYAEVRQSKEWTESADKELDAMEENDTWDVVPLPKGKKAIGCRWVHTLKFNADGTLERRK
          900       910       920       930       940       950    

BOY123 SRLVGKGYTQKEGLDYIETFSPVAKMATVKLLLKVGASKKWFLHQLDISNAFLNGELDEE
          960       970       980       990      1000      1010    

BOY123 IYMKLPEGYAERKGDLPPNAVCKLKKSIYGLKQASRQWFKKFSTSLFQLGFQKAHGDHTL
         1020      1030      1040      1050      1060      1070    

BOY123 FVRQTENDFVAVLVYVDDIVIASTDDAVAVKLKSDLKSFFKLRDLGSLKYFFGFGNL
         1080      1090      1100      1110      1120      1130 

Library scan:  0:00:00  total CPU time:  0:00:00