SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >MSG15.P1 (Universal genetic code) : 58 aa
 vs  library
 searching atap2122 library

    901 residues in     1 sequences
The best scores are:                              s-w
ATAP2122, 901 bases, 1831 checksum.                (901) 141

>>ATAP2122, 901 bases, 1831 checksum.                (901 aa)
Smith-Waterman score: 141;   37.879% identity in 66 aa overlap

ATAP21 MEDLFFLFHFSIGVGMDHSRLSPPMLWLVIESNGVYQLPTFGHIVSLMLQNYKSKSSRRR
               10        20        30        40        50        60

ATAP21 RDGSDSSLNVKKKAALIRKLYEDKLREALEEASENGSLFKSQDIDQDNGDGSLGRSRSLA
               70        80        90       100       110       120

                                      10        20        30       
MSG15.                        NSLPSHQESFSDFIQAYPNYSDTYKIDRLRSDHYFHL
                              .:.:  .:... :.. ::.:. . :::.::::.: ::
ATAP21 RLHAQREFLRATALAAERIIESEDSIPELREALTKFLSMYPKYQASEKIDQLRSDEYSHL
              130       140       150       160       170       180

        40                  50                                     
MSG15. GLS-----HY--TC---LDYIGIGLYSYSQL                             
       . :     ::  ::   :. :  .: ...                               
ATAP21 SSSASKTLHYWDTCTFSLSEITANLSNHALYGGAESGTVEHDIKTRIMDYLNIPENEYGL
              190       200       210       220       230       240

ATAP21 VFTVSRGSAFRLLAESYPFQSNKRLLTMFDHESQSVNWMAQTAREKGAKAYNAWFKWPTL
              250       260       270       280       290       300

ATAP21 KLCSTDLKKRLSYKKRKKKDSAVGLFVFPAQSRVTGTKYSYQWMALAQQNHWHVLLDAGS
              310       320       330       340       350       360

ATAP21 LGPKDMDSLGLSLFRPEFIITSFYRVFGHDPTGFGCLLIKKSVMGSLQSQSGKTGSGIVK
              370       380       390       400       410       420

ATAP21 ITPEYPLYLSDSVDGLDGLVGFEDHNDDKTKEAHRPGTQMPAFSGAYTSAQVRDVFETEL
              430       440       450       460       470       480

ATAP21 LEDNISSDRDGTTSTTIFEETESVSVGELMKSPVFSEDESSDNSFWIDLGQSPLGSDQHN
              490       500       510       520       530       540

ATAP21 KIASPLPPIWLTNKRKQKQRQSPKPIPKSYSSPLYDGNDVLSFDAAVMSVTEHGTNSTPS
              550       560       570       580       590       600

ATAP21 RNRRSSSNHLHVQEIQEENCGHSFANGLKSSNISSEIKESAIRRETEGEFRLLGGRDGGR
              610       620       630       640       650       660

ATAP21 SRLLGVEDEHPSKGRRVSFNMERVSHSIVEPGEASLASVYDEDYINTSDVENGDDEGADD
              670       680       690       700       710       720

ATAP21 EWDRRDTETEIVCRHIDHVNMLGLNKTTTRLRFLINWLVISLLQLQVPESGGRHMNLVQI
              730       740       750       760       770       780

ATAP21 YGPKIKYERGAAVAFNVRDKSKGFVSPEIVQRLGDREVDEKPRNHRARTKEDSALHLQNE
              790       800       810       820       830       840

ATAP21 AGKNGFIRFEVVTASLSFLTNFEDVYKLWVFVAKFLNPGFSREGSLPTVEEEEEEAENSE
              850       860       870       880       890       900

ATAP21 T
        

Library scan:  0:00:00  total CPU time:  0:00:00