SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >MSG15.9 (Universal genetic code) : 356 aa
 vs  library
 searching atrsp41 library

    356 residues in     1 sequences
The best scores are:                              s-w
ATRSP41, 356 bases, 1FEB checksum.                 (356)2421

>>ATRSP41, 356 bases, 1FEB checksum.                 (356 aa)
Smith-Waterman score: 2421;   99.719% identity in 356 aa overlap

               10        20        30        40        50        60
MSG15. MKPVFCGNFEYDARESDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
ATRSP4 MKPVFCGNFEYDARESDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEY
               10        20        30        40        50        60

               70        80        90       100       110       120
MSG15. GRTGRRLRVEWTKNDRGGAGRSGGSRRSSSGLRPSKTLFVINFDAQNTRTRDLERHFEPY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
ATRSP4 GRTGRRLRVEWTKNDRGGAGRSGGSRRSSSGLRPSKTLFVINFDAQNTRTRDLERHFEPY
               70        80        90       100       110       120

              130       140       150       160       170       180
MSG15. GKIVNVRIRRNFAFIQYEAQEDATRALDATNSSKLMDKVISVEYAVKDDDSRGNGYSPER
       :::::::::::.::::::::::::::::::::::::::::::::::::::::::::::::
ATRSP4 GKIVNVRIRRNYAFIQYEAQEDATRALDATNSSKLMDKVISVEYAVKDDDSRGNGYSPER
              130       140       150       160       170       180

              190       200       210       220       230       240
MSG15. RRDRSPDRRRRSPSPYRRERGSPDYGRGASPVAHKRERTSPDYGRGRRSPSPYKRARLSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
ATRSP4 RRDRSPDRRRRSPSPYRRERGSPDYGRGASPVAHKRERTSPDYGRGRRSPSPYKRARLSP
              190       200       210       220       230       240

              250       260       270       280       290       300
MSG15. DYKRDDRRRERVASPENGAVRNRSPRKGRGESRSPPPYEKRRESRSPPPYEKRRESRSPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
ATRSP4 DYKRDDRRRERVASPENGAVRNRSPRKGRGESRSPPPYEKRRESRSPPPYEKRRESRSPP
              250       260       270       280       290       300

              310       320       330       340       350      
MSG15. PYEKRRERSRSRSKSSPENGQVESPGQIMEVEAGRGYDGADSPIRESPSRSPPAEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
ATRSP4 PYEKRRERSRSRSKSSPENGQVESPGQIMEVEAGRGYDGADSPIRESPSRSPPAEE
              310       320       330       340       350      

Library scan:  0:00:00  total CPU time:  0:00:00