SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >MSG15.14 (Universal genetic code) : 287 aa
 vs  library
 searching dapb_syny3 library

    275 residues in     1 sequences
The best scores are:                              s-w
DAPB_SYNY3, 275 bases, 13B2 checksum.              (275) 698

>>DAPB_SYNY3, 275 bases, 13B2 checksum.              (275 aa)
Smith-Waterman score: 698;   41.219% identity in 279 aa overlap

               10        20        30        40        50        60
MSG15. MAAVNCHFFQLSRHLKPSRPSFSCSASQPSQNNIKVIINGAAKEIGRAAVVAVTKARGME
                                    .:. : :..:::: ..:: .. ::..:  ..
DAPB_S                            MANQDLIPVVVNGAAGKMGREVIKAVAQAPDLQ
                                          10        20        30   

                  70        80                   90         100    
MSG15. LAGAVDNH---FVGEDIGLLCDMEEPLEIPV-----------GKE-V-GVVIDFTDPSTV
       :.:::: :   . :.::: .  .  :::.::            .: . ::..::: :: :
DAPB_S LVGAVD-HNPSLQGQDIGEVVGIA-PLEVPVLADLQSVLVLATQEKIQGVMVDFTHPSGV
             40        50         60        70        80        90 

          110       120       130       140       150       160    
MSG15. YENVKQATAFGMKSVVYVPRIKPETVSALSALCDKATMGCLVAPTLSIGSILLQQAVIMA
       :.::..: :.:.. :: .  .. . .. :. . .::. :::.::...:: .:.:::...:
DAPB_S YDNVRSAIAYGVRPVVGTTGLSEQQIQDLGDFAEKASTGCLIAPNFAIGVLLMQQAAVQA
             100       110       120       130       140       150 

          170       180        190       200          210       220
MSG15. SFHYNNVELVESRPNA-ADLPSPEAIQIANNISNLGQIYNR---EDTEFSTYFQARGQVI
         ....::..: . :  :: ::  ::. :. ....:. .:    :. :  :   :.:  .
DAPB_S CQYFDHVEIIELHHNQKADAPSGTAIKTAQMLAEMGKTFNPPAVEEKE--TIAGAKGG-L
             160       170       180       190         200         

              230       240       250       260        270         
MSG15. GEDGVRVHSMVLPGLPSSTQVYFSSPGDVYTVKHDIIDVRS-LMPGLLLAIRKVVRLKNL
       :   . .::. :::: .  .: :.:::..::..::  : :.  :::.::.:::::.::.:
DAPB_S GPGQIPIHSIRLPGLIAHQEVLFGSPGQLYTIRHDTTD-RACYMPGVLLGIRKVVELKGL
      210       220       230       240        250       260       

     280       
MSG15. VYGLEKFL
       ::::::.:
DAPB_S VYGLEKLL
       270     

Library scan:  0:00:00  total CPU time:  0:00:00