SSEARCH searches a sequence database using the Smith-Waterman algorithm version 2.0u54, July. 1996 Please cite: T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; W.R. Pearson (1991) Genomics 11:635-650 >MSG15.13 (Universal genetic code) : 676 aa vs library searching ac003972 library 1118 residues in 1 sequences The best scores are: s-w AC003972, 1118 bases, 14FC checksum. (1118) 737 >>AC003972, 1118 bases, 14FC checksum. (1118 aa) Smith-Waterman score: 737; 29.206% identity in 743 aa overlap AC0039 MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGPGGPGGGGAG 10 20 30 40 50 60 AC0039 GPGGAGAGAAAGQLDAQVGPEGILQNGAVDDSVAKTSQLLAELNFEEDEEDTYYTKDLPI 70 80 90 100 110 120 AC0039 HACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETV 130 140 150 160 170 180 AC0039 LECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLS 190 200 210 220 230 240 10 MSG15. MTLTTNTRIWNAL : .: AC0039 WLVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAY 250 260 270 280 290 300 20 30 40 50 60 MSG15. HNEADI-STLTKSVLQANTEGT-EQCFCSEN-DGRSDLVLD---IIRST--KLNSS---- . . .: . :.: :.:. . .. ..: : :: :. : : : .:. AC0039 QYQ-NIFGPLVK--LEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLM 310 320 330 340 350 70 80 90 100 110 MSG15. QEDAILGCLETRNCTHKNSVKLIW-GPPRTGKTKTVATLL---FALLKLRCKTVVCAPTN : : : :: : .:... .: : :.. : .:. .:: . : :: AC0039 QGDEI--CL--R---YKGDLAPLWKG---IGHVIKVPDNYGDEIAI-ELR--SSVGAP-- 360 370 380 390 400 120 130 140 150 160 MSG15. TAIVQVTSRLLSLFKENSTA----ENA--TYRLGNIILSGN-RDRM-GINKNDHVLLDVF :.:: . : .::. ..: :. . . .:: .. : . .: :.. AC0039 ---VEVTHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVED-VIIKCQ 410 420 430 440 450 170 180 190 200 210 220 MSG15. LDERIGKLG--KL-FSP-FS--GWMQR-LESLIQFLENPEGKYERHVYELEEVERMNEED : .:. : : : .. .:: : :::: .: : . : : .. .. AC0039 LPKRFTAQGLPDLNHSQVYAVKTVLQRPL-SLIQ---GPPGTG-KTVTSATIVYHLARQG 460 470 480 490 500 510 230 240 250 260 270 MSG15. EREEVVVNIPT---FGEFVQKNFNS-LSEEVKTCI-----VDLYTHLPKVYLP-YEDVKK . :.: :. ....: .. : . :. : .: . : .: ...... AC0039 NGP-VLVCAPSNIAVDQLTEKIHQTGL-KVVRLCAKSREAID--S--PVSFLALHNQIRN 520 530 540 550 560 280 290 300 310 320 330 MSG15. MIASRQTLQRIRYFLRENSSRVDFEEGNFRFDCFKRLS--DDCLKALRLLPKRFEIPDML : : ::... :. : : :. :: :. : : : :: AC0039 M-DSMPELQKLQQ-LK------D-ETGE--------LSSADE--KRYRAL-KR------- 570 580 590 600 340 350 360 370 380 MSG15. ENEDIRKFCLQNADIILCTASGAAEMNVERTGNVEL--LVVDEAAQLKECESVAALQLPG : :.. :.:::.: :: ::.. : ..... ...::..: : : .. . : : AC0039 TAE--REL-LMNADVICCTCVGAGD---PRLAKMQFRSILIDESTQATEPECMVPVVL-G 610 620 630 640 650 390 400 410 420 430 440 MSG15. LRHAILIGDEFQL-PAMVHNEMCEKA-KFG--RSLFERLVLLGHNKHL-LDVQYRMHPSI .. ::.::. :: : .: ::.:: : : .:::::::.:: . . :.:::::::.. AC0039 AKQLILVGDHCQLGP-VV---MCKKAAKAGLSQSLFERLVVLG-IRPIRLQVQYRMHPAL 660 670 680 690 700 450 460 470 480 490 500 MSG15. SRFPNKEFYGGRIKDAENVKESIYQKRF-LKGNMFDSFSFINVGRGKEEFGD-GHSPKNM : ::.. :: : .... .. . . .: : .. . :. :. : .:.::... : : : AC0039 SAFPSNIFYEGSLQNGVTAADRV-KKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNR 710 720 730 740 750 760 510 520 530 540 550 MSG15. VEVAVISEIISNLYKVSCERRMKVSVGVVSPYKGQMRA--IQEKIGDKYS-SLSGQQFT- .:.: . .: ..: :.. . ..:...::.:: :. .: ..: :: . . AC0039 TEAANVEKITTKLLKAGAKPD---QIGIITPYEGQ-RSYLVQYM---QFSGSLHTKLYQE 770 780 790 800 810 820 560 570 580 590 600 610 MSG15. LNVRSVDGFQGGEEDIIIISTVRSNGN-GKVGFLNNRQRANVALTRARHCLWVIGNETTL ... :::.::: :.:.::.: ::.: . : .::::. .: ::::::::. . ..:: AC0039 VEIASVDAFQGREKDFIILSCVRANEHQG-IGFLNDPRRLNVALTRARYGVIIVGNPK-- 830 840 850 860 870 620 630 640 650 MSG15. ALSGS-IWATLIS---ESRT--RGCFHDATDE-MNL---R---DAMNE-A--L---LEDV ::: . .: :.. :... .: ... . :.. : ...: : . . :. AC0039 ALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDA 880 890 900 910 920 930 660 670 MSG15. SSSL--GSLSLRNGHGRRNVW .. ::. :...:: AC0039 REAIIPGSVYDRSSQGRPSSMYFQTHDQIGMISAGPSHVAAMNIPIPFNLVMPPMPPPGY 940 950 960 970 980 990 AC0039 FGQANGPAAGRGTPKGKTGRGGRQKNRFGLPGPSQTNLPNSQASQDVASQPFSQGALTQG 1000 1010 1020 1030 1040 1050 AC0039 YISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQ 1060 1070 1080 1090 1100 1110 AC0039 Y Library scan: 0:00:00 total CPU time: 0:00:00