SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >MSG15.11 (Universal genetic code) : 326 aa
 vs  library
 searching af0492362 library

    269 residues in     1 sequences
The best scores are:                              s-w
AF0492362, 269 bases, 192A checksum.               (269) 528

>>AF0492362, 269 bases, 192A checksum.               (269 aa)
Smith-Waterman score: 528;   35.570% identity in 298 aa overlap

               10        20        30        40                    
MSG15. MTNGGRGSGGGGGGGGRESGGRDLEIRPGGMLVQKRNPDL---D--PVGPPPPP------
                        ::   . :.::::::::.:. :    :  :.  :         
AF0492           MMHNSTEES---EWEVRPGGMLVQRRD-DTASSDHKPLQDPDSASAAFAQ
                            10        20         30        40      

      50        60        70        80        90       100         
MSG15. MIRVRIKYGAVYHEINISPQASFGELKKMLTGPTGIHHQDQKLMYKDKERDSKAFLDVSG
        ::. ...:. .:...:: .:.::..:: :.  ::.. .. :....  :::.   :...:
AF0492 TIRITVSHGSSHHDLHISAHATFGDVKKALVQKTGLEASELKILFRGVERDDAEQLQAAG
         50        60        70        80        90       100      

     110        120       130          140       150       160     
MSG15. VKDKSKMVLI-EDPLSQEKRFLEMRK--IAKT-EKASKAISDISLEVDRLGGRVSAFEMV
       ::: ::.:.. ::    .:: .:..   ..:  :::  :.. .. :::.:. :: :.: :
AF0492 VKDASKLVVVVEDT---NKR-VEQQPPVVTKEMEKAIAAVNAVTGEVDKLSDRVVALE-V
        110       120           130       140       150       160  

         170        180       190       200       210       220    
MSG15. TKKGG-KIAEKDLVTVIELLMNELIKLDAIVAEGDVKLQRKMQVKRVQNYVETLDALKVK
       . .:: ..: ...  . :::: .:.:::.: ::::.:.::: .:.:.::  :..: ::..
AF0492 AVNGGTQVAVREFDMAAELLMRQLLKLDGIEAEGDAKVQRKAEVRRIQNLQEAVDKLKAR
             170       180       190       200       210       220 

          230       240       250       260       270       280    
MSG15. NSMANGQQKQSSTAQRLAPIQEHNNEERQEQKPIQSLMDMPIQYKEKKQEIEEEPRNSGE
        :  :    ::..:   : .   ..: ..  . . :: . :             :  :  
AF0492 CS--NPFVDQSKAA---A-V---STEWESFGNGVGSL-NPP-------------PPAS--
               230              240        250                     

          290       300       310       320      
MSG15. GPFVLDSSAKWETFDHHPVTPLSSTTAKNNAIPPRFNWEFFD
        : . . .  :: ::                           
AF0492 -PSA-NVTQDWEKFD                           
          260                                    

Library scan:  0:00:00  total CPU time:  0:00:00