SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >MSF19.P2 (Universal genetic code) : 133 aa
 vs  library
 searching gi:3004550 library

    302 residues in     1 sequences
The best scores are:                              s-w
gi|3004550                                         (302) 635

>>gi|3004550                                         (302 aa)
Smith-Waterman score: 635;   69.504% identity in 141 aa overlap

gi|300 MKQNTSSRENQFGIKETVLENFPNVTPQFMSDQINGHQDKPEKAKKNPESYGLGLEQCVK
               10        20        30        40        50        60

gi|300 IIRKLECSGYVESTFRQKFLTWFSLRATSQERNTVTTFMNAFNDDSMALAEQLVDTFSDC
               70        80        90       100       110       120

                                                       10        20
MSF19.                                         RDYTFANEDNLEHCTKYLNQ
                                               :. .::. ::::.: :::::
gi|300 IWSKGSVIGDRDGGGSSGVSFDATVWFLTVTDRVSFLVISRERNFADVDNLENCIKYLNQ
              130       140       150       160       170       180

               30                40        50        60        70  
MSF19. TMVTFGFPASLDLFSNDPV--------SISRTCNCMYSLLQQRQRDIEFRESANELRQRQ
       ..:: :: ::::::..:::        ::.:::::.:.:.::::::.:::::::. ::: 
gi|300 SLVTSGFSASLDLFATDPVRFNHSLIVSIARTCNCVYALIQQRQRDVEFRESANDQRQRL
              190       200       210       220       230       240

             80        90       100       110       120       130  
MSF19. QSDIARLEAKVERLEALLQQKDREIATITRTEAKNTAALKSQIEKLQQERDEFQRMVIGN
        ::.:::::::::::. :: :.::....::::::::::::.: ::::.::::::::::.:
gi|300 LSDMARLEAKVERLETQLQAKERELGSVTRTEAKNTAALKTQNEKLQKERDEFQRMVIAN
              250       260       270       280       290       300

         
MSF19. Q 
       : 
gi|300 QV
         

Library scan:  0:00:00  total CPU time:  0:00:00