SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >MRG7.18 (Universal genetic code) : 133 aa
 vs  library
 searching jq2288 library

    255 residues in     1 sequences
The best scores are:                              s-w
JQ2288, 255 bases, FD checksum.                    (255) 215

>>JQ2288, 255 bases, FD checksum.                    (255 aa)
Smith-Waterman score: 215;   30.000% identity in 130 aa overlap

JQ2288 MPISRIAIGNSSELNQSDALKAALAEFISMLIFVFAGEGSGMAYNKLTNNGSATPAGLVA
               10        20        30        40        50        60

                                                                   
MRG7.1                                                        MEMIP
                                                                   
JQ2288 ASLSHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLFRSILYWIAQLLGSVVACLL
               70        80        90       100       110       120

          10        20              30        40        50         
MRG7.1 EKYKTRIGGKPSLQF----GAHNG-A-ISEVVLSFSVTFLVLLIILRGPRKLLAKTFLLA
        :. :  ::  .  :    :.. : : . :.:..:.... :    .  :.:  .   :  
JQ2288 LKFAT--GGLETSAFALSPGVEAGNALVFEIVMTFGLVYTVYATAV-DPKK--GD--LGI
                130       140       150       160          170     

      60         70              80        90       100       110  
MRG7.1 LATVSV-FVVGSKFTR--PF----MNPAIAFGWAYIYKSHNTWDHFYVYWISSYTGAILS
       .: ... :.::...     :    ::::..:: : .  :  ::.. .:::.. ..:: ..
JQ2288 IAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVV--SW-TWSNHWVYWVGPFAGAAIA
           180       190       200         210        220       230

            120       130       
MRG7.1 AMLFRIIFPAPPLVQKKQKKA    
       :....:.: .:              
JQ2288 AIVYEIFFISPNTHEQLPVTDSLEA
              240       250     

Library scan:  0:00:00  total CPU time:  0:00:00