SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >MRG7.11 (Universal genetic code) : 89 aa
 vs  library
 searching tcpq_mouse library

    548 residues in     1 sequences
The best scores are:                              s-w
TCPQ_MOUSE, 548 bases, 603 checksum.               (548) 178

>>TCPQ_MOUSE, 548 bases, 603 checksum.               (548 aa)
Smith-Waterman score: 178;   37.179% identity in 78 aa overlap

                10        20        30        40        50         
MRG7.1 MGIST-QSHGIQSMLKEGYRHLAGLDEAVIKNTEACKELSTITRTSLSPNGLPLVVGFEI
       :.. . .. :. .:::.: .:..::.::: .: .:::::.  :::. .:::.  .:   :
TCPQ_M MALHVPKAPGFAQMLKDGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMV---I
               10        20        30        40        50          

      60        70        80                                       
MRG7.1 YRFCNIIMAKPAGGPRRDAAAAAGAGMDED                              
        :. ...... :.   :.                                          
TCPQ_M NRLEKLFVTNDAATILRELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVFAGALLELAEE
        60        70        80        90       100       110       

TCPQ_M LLRIGLSVSEVISGYEIACKKAHEILPELVCCSAKNLRDVDEVSSLLRTSIMSKQYGSET
       120       130       140       150       160       170       

TCPQ_M FLAKLIAQACVSIFPDSGNFNVDNIRVCKILGSGIYSSSVLHGMVFKKETEGDVTSVKDA
       180       190       200       210       220       230       

TCPQ_M KIAVYSCPFDGMITETKGTVLIKTAEELMNFSKGEENLMDAQVKAIAGTGANVIVTGGKV
       240       250       260       270       280       290       

TCPQ_M ADIALHYANKYNIMLVRLNSKWDLRRLCKTVGATALPKLTPPVQEEMGHCDSVYLSEVGD
       300       310       320       330       340       350       

TCPQ_M TQVVVFKHEKEDGAISTIVLRGSTDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEI
       360       370       380       390       400       410       

TCPQ_M ELAKQITSYGETCPGLEQYAIKKFAEAFEAIPRALAENSGVKANEVISKLYSVHQEGNKN
       420       430       440       450       460       470       

TCPQ_M VGLDIEAEVPAVKDMLEASILDTYLGKYWAIKLATNAAVTVLRVDQIIMAKPAGGPKPPS
       480       490       500       510       520       530       

TCPQ_M GKKDWDDDQND
       540        

Library scan:  0:00:00  total CPU time:  0:00:00