SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >MRA19.9 (Universal genetic code) : 538 aa
 vs  library
 searching ig002n014 library

    589 residues in     1 sequences
The best scores are:                              s-w
IG002N014, 589 bases, 11DE checksum.               (589)1369

>>IG002N014, 589 bases, 11DE checksum.               (589 aa)
Smith-Waterman score: 1369;   40.551% identity in 508 aa overlap

IG002N MATTAVNLPIHEHPLYPSARCIIGECDGCHVNGYMYNGYFCNEPFCFIWFHKECAEAPAE
               10        20        30        40        50        60

                                           10        20        30  
MRA19.                     MSWLC--RLLP------TKTLKADLPDPLMDQQSERVKQ-
                              ::  .:::      :  .:.::    :  .   ... 
IG002N ISHSSHHQHPLLLTNDSIDGPCDLCGQKLLPPCYSCSTCEFKVDLTCA-MKPSPPAIEHP
               70        80        90       100        110         

               40        50        60          70        80        
MRA19. FCNH-PLRYARIKQEGVITGRSNNCDGCGDD-SGYGYYC-ELCNIQAHVACIGWPDIINH
       .:.:  : . . ..: :    :  :. : :. .: .: : : :..  :: ::     .::
IG002N LCHHHSLVFLKKREEKV----S--CELCKDSIAGPSYSCLE-CDVYFHVNCIQLSKEVNH
     120       130             140       150        160       170  

       90       100         110        120       130       140     
MRA19. PCHSRHPLKKVSP-ETI-DYTDGKCQFC-RSPLVDLMYHCSICNFSVDLRCWLNPAPLTI
       :::: :::: . : :.. : ..  : .: ..:  ...::::.:::.  : :  :: :: .
IG002N PCHSAHPLKLI-PFESLTDDAETTCLLCGKKPAENMLYHCSVCNFTSCLGCTKNP-PLLV
            180        190       200       210       220        230

          150       160       170       180       190       200    
MRA19. YEQ-KSHSHTLTLMARKDAFTCNACGLVGDRNPYVCLECDFMLHKGCINLPRVININRHD
        :. :.:.: : :. :.    :. ::   .   ::: .:::.  .:::.: :::::::::
IG002N IEHIKTHKHPLILFPRRIPCICDICGKKCEFAVYVCPQCDFVTARGCIDLARVININRHD
              240       250       260       270       280       290

          210       220       230       240       250       260    
MRA19. HKISRTYHLGHGDWECGVCRQKMDWTLGAFFCSRCPNYAVHSKCATREDVWDGKELEDKP
       :.:  :.::: :  .::::.....   ::. :: ::.::::: ::.: ::::: :::   
IG002N HRIYLTHHLGTGYSKCGVCHENVNQYKGAYSCSVCPHYAVHSTCAVRTDVWDGVELEGTT
              300       310       320       330       340       350

           270       280       290        300       310       320  
MRA19. E-DEGEEDPYKVINEKEIIHFSHEEHNLKLGDDDN-AADYEKMWCDACIRPIDSDPFFKC
       :  : ...:.::.... : ::::::: :..  ::    : .:  : :::.:.    .. :
IG002N EITE-DNSPFKVVGDNLICHFSHEEHPLRFQKDDVFIHDEHKR-CAACIHPLGFGSIY-C
               360       370       380       390        400        

             330       340          350         360       370      
MRA19. VE-CKFFLHKVCASLPRKKRNILHSH---LLR--LQYGDRHGKPFKCTSCLQYFDGFKYK
        : : :.::. ::.:: ::: .. ..   :..   :  :       :: :  . ::: :.
IG002N CETCPFILHEKCANLPMKKRLVFGTRPYTLMKETTQLTD-------CTLCGIFSDGFAYS
       410       420       430       440              450       460

        380       390       400       410        420        430    
MRA19. CNFNSACIHMNILFDIRCSSISEPFQHELHPHPL-FRTSKEHKTCGACGED-SEYVLSCI
         .      ...  :..:.:..::. :. : ::: :   . :  : .: .. ..:.: : 
IG002N SRW------LDV--DVHCGSLNEPLVHDGHIHPLNFDKMEGH-FCDGCKKNIDDYMLRCK
                      470       480       490        500       510 

          440       450       460         470       480       490  
MRA19. VCDFALGMDCATLPRKVKHRCDDHVLSL--HHGAGSSNGQLWCDICEGKTDASVWYYGCD
       .::: : . :::::.:. :: : : :.:  ..   .:. . :::::: . :         
IG002N ACDFDLCLYCATLPKKIWHRNDGHPLTLCCEEKEEASD-KYWCDICEKELDPMCIRRFLT
             520       530       540        550       560       570

            500       510       520       530        
MRA19. ECGVTLHIEVLHIQIQLLYTLVQESVHTEATTVGRSESELICFRIL
                                                     
IG002N SRARTKLLVWGKSQVWGGS                           
              580                                    

Library scan:  0:00:00  total CPU time:  0:00:01