SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >MRA19.14 (Universal genetic code) : 423 aa
 vs  library
 searching ig002n0129 library

    878 residues in     1 sequences
The best scores are:                              s-w
IG002N0129, 878 bases, E2 checksum.                (878) 684

>>IG002N0129, 878 bases, E2 checksum.                (878 aa)
Smith-Waterman score: 684;   32.903% identity in 465 aa overlap

IG002N MDTSFWKKEEGFMTFIVKPQSKSSRPETDSSAEPLTRLNRRDKELSIYRLGVSEMEPKLL
               10        20        30        40        50        60

                                   10        20        30          
MRA19.                    MNSLKS-LRYSSIREALTHQNPTKSSFLCPLY-FYN-QRRW
                            :.:: : .:.:: : . :   .. .:   : :.. .:. 
IG002N LSAHKPLFVSCNSPFNEKTKLSVKSGLPMSTIRAARS-QFMGEGLILGNKYGFWSTSRKT
               70        80        90        100       110         

          40        50        60        70        80          90   
MRA19. ---LKPVDSAQTRLENRTRDHQLDKIIPQIRKLNIILEISKLMSSKKRGP--FVSLQLMS
          ..:: .:  :   : ..  .:... . .::...:.: :.. :.   :  ..::. ..
IG002N RVVVEPVRAAVKR---R-KELTFDSVVQRDKKLKLVLNIRKILVSQ---PDRMMSLRGLG
     120       130           140       150       160          170  

           100          110       120        130        140        
MRA19. RWKNLVGLNVN---VGAFIGKYPHAFEIFTH-PFSKNLCCKIT-EKFKVLIDEEENVVR-
       ...  .::.     . :.. ::: .:::  .  .:  :  :.: :  .. .:: .  .: 
IG002N KYRRDLGLKKRRRFI-ALLRKYPGVFEIVEEGAYS--LRFKMTSEAERLYLDEMR--IRN
            180        190       200         210       220         

       150        160         170       180       190       200    
MRA19. ECEVDA-VKRVKKLLLLS--KHGVLRVHALRLIRKELGLPEDFRDSILAKYSSEFRLVDL
       : : :. : ...::...:  :. .: .. .  .. .:::: .:::.:  .: . ::.:  
IG002N ELE-DVLVVKLRKLVMMSIDKR-IL-LEKISHLKTDLGLPLEFRDTICQRYPQYFRVVPT
       230        240        250        260       270       280    

             210       220             230          240       250  
MRA19. E---TLELVDRDDESLCVAKVE--E----WREVEYREKWLS---KFETNYAFPIHLPTGF
           .:::.  : : : :. .:  :     :: : :.  ..   ::  :    ..:: :.
IG002N PRGPALELTHWDPE-LAVSAAELSEDDNRTRESEERNLIIDRPPKF--NR---VKLPRGL
          290        300       310       320         330           

            260       270        280        290       300       310
MRA19. KIEKGFREELKNWQRVPYVKPY-DRKEISRG-LERFEKRVVAVIHELLSLTVEKMVEVER
       .. :.  ....... . :..:: : ...  : ::. ::.. .:::::::::.:: . :..
IG002N NLSKSETRKISQFRDMQYISPYKDFSHLRSGTLEK-EKHACGVIHELLSLTTEKRTLVDH
      340       350       360       370        380       390       

              320       330       340       350       360       370
MRA19. LAHFRKDLGIEVNVREVILKHPGIFYVSTKGSSQTLFLREAYSKGCLIEPNPIYNVRRKM
       :.:::... .  ..: ....:: .:::: ::  ...:::::: .. ::. .:.  :..::
IG002N LTHFREEFRFSQQLRGMLIRHPDLFYVSLKGERDSVFLREAYRNSELIDKDPLTLVKEKM
       400       410       420       430       440       450       

              380       390         400                    410     
MRA19. LDLVLLKTRYSRMLLQREDETHRE-E-KSRDV------LISSNEDW-------EG---GR
         :: .  :. :    :.::  :: :  . :.        :. :.:       ::   : 
IG002N RALVSVP-RFPRRGGPRKDEEGREVEIDGSDADGEEEEEESDAEEWSDVDGYLEGEDGGN
       460        470       480       490       500       510      

              420                                                  
MRA19. D--GDWVLPILGK                                               
       :  :::.                                                     
IG002N DDDGDWTDDEGEEDVPPNFDDDDEDEEEDSVKIGLSPSSRKSSSPRKKEEKLQNKGVNFD
        520       530       540       550       560       570      

IG002N EVVLAMVLRICAVLMYRFLGLTIHGGLIKRGLDNSDTRVVSASMGFYGRCVSLGFANKLF
        580       590       600       610       620       630      

IG002N DEMPKRDDLAWNEIVMVNLRSGNWEKAVELFREMQFSGAKAYDSTMVKLLQVCSNKEGFA
        640       650       660       670       680       690      

IG002N EGRQIHGYVLRLGLESNVSMCNSLIVMYSRNGKLELSRKVFNSMKDRNLSSWNSILSSYT
        700       710       720       730       740       750      

IG002N KLGYVDDAIGLLDEMEICGLKPDIVTWNSLLSGYASKGLSKDAIAVLKRMQIAGLKPSTS
        760       770       780       790       800       810      

IG002N SISSLLQAVAEPGHLKLGKAIHGYILRNQLWYDVYVETTLIDMYIKTGYLPYARMVFDMM
        820       830       840       850       860       870      

IG002N DA
         

Library scan:  0:00:00  total CPU time:  0:00:01