SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >MRA19.11 (Universal genetic code) : 425 aa
 vs  library
 searching rlk5_arath library

    999 residues in     1 sequences
The best scores are:                              s-w
RLK5_ARATH, 999 bases, 837 checksum.               (999) 518

>>RLK5_ARATH, 999 bases, 837 checksum.               (999 aa)
Smith-Waterman score: 518;   33.051% identity in 472 aa overlap

RLK5_A MLYCLILLLCLSSTYLPSLSLNQDATILRQAKLGLSDPAQSLSSWSDNNDVTPCKWLGVS
               10        20        30        40        50        60

RLK5_A CDATSNVVSVDLSSFMLVGPFPSILCHLPSLHSLSLYNNSINGSLSADDFDTCHNLISLD
               70        80        90       100       110       120

RLK5_A LSENLLVGSIPKSLPFNLPNLKFLEISGNNLSDTIPSSFGEFRKLESLNLAGNFLSGTIP
              130       140       150       160       170       180

                                                        10         
MRA19.                                          MKPQQPQPPLL--LLLLLP
                                                     : :: :  :  :. 
RLK5_A ASLGNVTTLKELKLAYNLFSPSQIPSQLGNLTELQVLWLAGCNLVGPIPPSLSRLTSLVN
              190       200       210       220       230       240

        20           30        40           50        60        70 
MRA19. LLLT---TVSSYPLNPKQLKALQSLNI--STPTND-PCNNNNNQSSSSSITCDDASPYRH
       : ::    ..: :    :::.......  .. ... : .. .:... . .   ::: . .
RLK5_A LDLTFNQLTGSIPSWITQLKTVEQIELFNNSFSGELP-ESMGNMTTLKRF---DAS-MNK
              250       260       270        280          290      

               80        90       100       110       120       130
MRA19. ITS-ISFTNCSSTLSLPSKTLKPLSKSLISLSFTNCPSLSPPYHLPISLHSFSAVSSFLQ
       .:. :   :    :.:    :. : .:: .: : :   :  :  :: :. . : . : :.
RLK5_A LTGKIP-DN----LNL----LN-L-ESL-NL-FEN--MLEGP--LPESI-TRSKTLSELK
         300                  310           320          330       

                140            150           160                   
MRA19. --NNRTKLSGLFLARL-KN--LK--TL-Y--ISST-PIQTSR--RL-YVIL------G--
         :::  :.:.. ..:  :  :.   : :  .:.  : ..    .: :.::      :  
RLK5_A LFNNR--LTGVLPSQLGANSPLQYVDLSYNRFSGEIPANVCGEGKLEYLILIDNSFSGEI
       340         350       360       370       380       390     

        170          180       190         200       210       220 
MRA19. --NMHKLTSLT---ISNSNLTGLIPKSFHS--NLRYIDLSNNSLKGSIRISITRLKNLKS
         :. :  :::   .::..:.: ::..: .   :  ..::.::. :::  .:   :::..
RLK5_A SNNLGKCKSLTRVRLSNNKLSGQIPHGFWGLPRLSLLELSDNSFTGSIPKTIIGAKNLSN
         400       410       420       430       440       450     

             230       240       250       260       270       280 
MRA19. LNLSHNSLSGQIPNKIKSLTFLKNLSLASNKLSGTIPNSLSSISELTHLDLSMNQLNGTV
       : .:.: .::.:::.: ::. . ..: : : .:: ::.:: ....:..:::: :::.: .
RLK5_A LRISKNRFSGSIPNEIGSLNGIIEISGAENDFSGEIPESLVKLKQLSRLDLSKNQLSGEI
         460       470       480       490       500       510     

             290       300        310       320               330  
MRA19. PSFFSEMKNLKHLNLADNSFHGVLPFNE-SFIKNLNFFEIGRN--S-----ELCYN-K-T
       :  .   :::..::::.: . : .: .: ...  ::..... :  :     ::  : : .
RLK5_A PRELRGWKNLNELNLANNHLSGEIP-KEVGILPVLNYLDLSSNQFSGEIPLEL-QNLKLN
         520       530       540        550       560        570   

               340       350       360          370       380      
MRA19. VL--SSNLKLEGLAPCDKYGFPLWSPSQKEESLSGEND---YDVEGGNEEKTENLKTKEE
       ::  : : .: :  :      ::.. .   ... : :     :..:  .. :   ..:  
RLK5_A VLNLSYN-HLSGKIP------PLYANKIYAHDFIG-NPGLCVDLDGLCRKIT---RSK--
           580              590       600        610          620  

        390       400        410       420                         
MRA19. EEEEHKGSNKTLFGLGIGLFS-LVFLILFLFYLAKRCRLI                    
           . :    :  : : :.. :::.. .....:: ::                      
RLK5_A ----NIGYVWIL--LTIFLLAGLVFVVGIVMFIAK-CRKLRALKSSTLAASKWRSFHKLH
                    630       640        650       660       670   

RLK5_A FSEHEIADCLDEKNVIGFGSSGKVYKVELRGGEVVAVKKLNKSVKGGDDEYSSDSLNRDV
           680       690       700       710       720       730   

RLK5_A FAAEVETLGTIRHKSIVRLWCCCSSGDCKLLVYEYMPNGSLADVLHGDRKGGVVLGWPER
           740       750       760       770       780       790   

RLK5_A LRIALDAAEGLSYLHHDCVPPIVHRDVKSSNILLDSDYGAKVADFGIAKVGQMSGSKTPE
           800       810       820       830       840       850   

RLK5_A AMSGIAGSCGYIAPEYVYTLRVNEKSDIYSFGVVLLELVTGKQPTDSELGDKDMAKWVCT
           860       870       880       890       900       910   

RLK5_A ALDKCGLEPVIDPKLDLKFKEEISKVIHIGLLCTSPLPLNRPSMRKVVIMLQEVSGAVPC
           920       930       940       950       960       970   

RLK5_A SSPNTSKRSKTGGKLSPYYTEDLNSV
           980       990         

Library scan:  0:00:00  total CPU time:  0:00:01