SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >MQN23.P1 (Universal genetic code) : 477 aa
 vs  library
 searching af026123 library

   1216 residues in     1 sequences
The best scores are:                              s-w
AF026123, 1216 bases, 260C checksum.               (1216) 662

>>AF026123, 1216 bases, 260C checksum.               (1216 aa)
Smith-Waterman score: 662;   30.270% identity in 555 aa overlap

AF0261 ARDHSRWCLRAPEEKEVIKGLYGKPTDAYGCLGELSLKSGGVPLSFLVLVTGCTSVGRIP
               10        20        30        40        50        60

AF0261 DAEIYKITGTEFYPLQEEAKEEDRLPALKKILSSGVFYFAWPNDGACFDLTIRAQKQGDD
               70        80        90       100       110       120

AF0261 CSEWGTSFFWNQLLHVPLRQHQVNCHDWLLKVICGVVTIRTVYASHKQAKACLISRISCE
              130       140       150       160       170       180

AF0261 RAGARFLTRGVNDDGHVSNFVETEQAIYMDDGVSSFVQIRGSVPLFWEQPGLQVGSHHLR
              190       200       210       220       230       240

                                             10             20     
MQN23.                               PTGDSPASQVTTNH--QRLIF---HHPDSK
                                       :.  . .:  :.  ..:..   :  :. 
AF0261 LHRGLEANAPAFERHMVLLKEQYGQQVVVNLLGSRGGEEVL-NRAFKKLLWASCHAGDT-
              250       260       270       280        290         

          30         40        50            60            70      
MQN23. KSILPNI-FGSRRCDFERRMTSRKKSVLDNT-SPMI---WKT--VSER-KS-SPGIE-G-
           : : :     ::..   .::   :.:   :..   :    :  . .. :: .. : 
AF0261 ----PMINF-----DFHQFAKGRKLEKLENLLRPQLKLHWDDFGVFAKGENVSPRFQKGT
          300            310       320       330       340         

              80          90        100        110       120       
MQN23. --LN-LSSFDRPMAPTTE--IRELRVF-LATWNVG-GRTPNNDLNLEDFLLVEGTADLYI
         .: :. .::  . :..  :  :.:. :   ..: .  : .:  .:.:   ..  .:  
AF0261 LRMNCLDCLDR--TNTVQCFI-ALEVLHLQLESLGLNSKPITDRFVESF---KAMWSLNG
     350       360          370       380       390          400   

       130          140         150         160               170  
MQN23. CGFQEIVPLS-A--GNVLV--VEDNEPAAKWLA-LI-SQALNKPKQES--------VYSN
        :....   : :  :.. :  ..:   .:. ..  : :. ..  :::.        ::..
AF0261 HGLSKVFTGSRALEGKAKVGKLKD---GARSMSRTIQSNFFDGVKQEAIKLLLVGDVYNE
           410       420          430       440       450       460

            180         190        200        210       220        
MQN23. AAYSASRTTTCSSS--SCGSEESRAPSS-LSFFQRPN-LKVLSRNYRVDSSLLKTCNCPV
        . . .:    ...  . ::... . :. :.    :  ::....  : .: .  : :   
AF0261 ESTDKGRMLLDNTALLGLGSNKQNSLSGMLDGKATPRILKAMTE--R-QSEF--T-NFKR
              470       480       490       500            510     

      230        240                          250        260       
MQN23. IDTSVG-WEARRSKRF----------SD-----P--S--TDSSNNVEPEN-FRV-HENFL
       :. ..: :..  .:.:          .:     :  :  .::...  : . : :  :...
AF0261 IQIAMGTWNVNGGKQFRSNLLGTTELTDWLLDAPQLSGAVDSQDDGGPADIFAVGFEEMV
          520       530       540       550       560       570    

            270           280               290       300       310
MQN23. -FDD---VPATT---KMPG-QM------SYR--LIASKQMVGLFLSVWARRELIPHISHL
        ..    : :.:   :: : :.      :.:  :..: :.::. : ...:   .: :  .
AF0261 ELSAGNIVNASTTNRKMWGEQLQKAISRSHRYILLTSAQLVGVCLYIFVRPYHVPFIRDV
          580       590       600       610       620       630    

              320       330       340       350       360       370
MQN23. RLDSVGRGIMGRLGNKGCIAISMSLHQTSFCFVCSHLASGEKEGDELRRNADVAEILKHT
        .:.:  :. :. :::: ..: ...:.:::::.::::..:...  :  :: :  :: .. 
AF0261 AIDTVKTGMGGKAGNKGAVGIRFQFHSTSFCFICSHLTAGQSQVKE--RNEDYREITHKL
          640       650       660       670       680         690  

              380       390       400       410       420       430
MQN23. QFPKLTKNPNCHAPERIIDHDRVLWLGDLNYRVALTYEETRVLLEDNDWDTLLERDQLNM
       .::.  .:        :..:: :.: ::.:::. :::::.  ... .::  :.: :::..
AF0261 SFPS-GRN--------IFSHDYVFWCGDFNYRIDLTYEEVFYFVKRQDWKKLMEFDQLQL
                     700       710       720       730       740   

              440       450       460       470                    
MQN23. ERGAGRVFSGFQEGQIFFAPTYKYSQNSDAYAGEMTKSKKKRRTPAW             
       ....:..:. :.:: : :.:::::. .: ::    : : : : ::::             
AF0261 QKSSGKIFKDFHEGTINFGPTYKYDVGSAAYD---T-SDKCR-TPAWTDRVLWWRKKHPY
           750       760       770           780        790        

AF0261 DKTAGELNLLDSDLDGDANIRHTWSPGTLKYYGRAELQASDHRPVLAIVEVEVQEVDVGA
      800       810       820       830       840       850        

AF0261 RERVFQEVSSVQGPLDATVVVNLQSPTLEERNEFPEDLRTELMQTLGNYGTIILVRINQG
      860       870       880       890       900       910        

AF0261 QMLVTFADSHSALSVLDVDGMKVKGRAVKIRPKTKDWLEGLREELIRKRDSMAPVSPTAN
      920       930       940       950       960       970        

AF0261 SCLLEENFDFTSLDYESEGDVLEDDEDYLADEFGQPVVSDSELGGDDSSDTMSASTPASK
      980       990      1000      1010      1020      1030        

AF0261 SPALAKKKQHPTYKAGLMVKKSASDASISSGTHGQCSILQTAKLLPGAPQQPPKARTGIS
     1040      1050      1060      1070      1080      1090        

AF0261 KPYNVKQIKTTNAQEAEAAIRCLLEAGGGVPESAPGATPLRNQGSSKPEASLGPPVLPRR
     1100      1110      1120      1130      1140      1150        

AF0261 PVPRVPTMKKPTLRRTGKIVFCSSSQASQPCSLLQRHEFVRTVAAQRLTPVDASGSSV
     1160      1170      1180      1190      1200      1210      

Library scan:  0:00:00  total CPU time:  0:00:02