SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >MQN23.13 (Universal genetic code) : 226 aa
 vs  library
 searching tobntrac library

    222 residues in     1 sequences
The best scores are:                              s-w
TOBNTRAC, 222 bases, 1535 checksum.                (222)1244

>>TOBNTRAC, 222 bases, 1535 checksum.                (222 aa)
Smith-Waterman score: 1244;   84.956% identity in 226 aa overlap

               10        20        30        40        50        60
MQN23. MTSGGGYGDPSQKIDYVFKVVLIGDSAVGKSQILARYARDEFSLDSKATIGVEFQTRTLV
       :.:  :::: ::::::::::::::::::::::::::.::.:::::::::::::::::::.
TOBNTR MAS--GYGDASQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLA
                 10        20        30        40        50        

               70        80        90       100       110       120
MQN23. IDHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITRRQTFDHIPRWLEELRAHAD
       :.::::::::::::::::::::::::::::::::::::::.:::::::::::::::::::
TOBNTR IQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRAHAD
       60        70        80        90       100       110        

              130       140       150       160       170       180
MQN23. KNIVIILIGNKSDLVDQRAIPTEDAKEFAEKEGLFFLETSAFNATNVESAFSTVLTEIFN
       .::::.:::::.:: ::::.:::::::::.:::::::::::..:::.:.:: ::::::::
TOBNTR RNIVIMLIGNKTDLEDQRAVPTEDAKEFAQKEGLFFLETSAMEATNLEDAFLTVLTEIFN
      120       130       140       150       160       170        

              190       200       210       220      
MQN23. IVNKKSLAASEDQENGNPGSLAGKKIDIVPGPGQVIPNKSNMCCNS
       :::::.:::...: ::::.::.:::: .:::::::::.:.  ::.:
TOBNTR IVNKKNLAADDNQSNGNPASLTGKKI-LVPGPGQVIPEKKA-CCSS
      180       190       200        210        220  

Library scan:  0:00:00  total CPU time:  0:00:00