SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >MQN23.10 (Universal genetic code) : 368 aa
 vs  library
 searching jq1678 library

    367 residues in     1 sequences
The best scores are:                              s-w
JQ1678, 367 bases, 10BC checksum.                  (367)2423

>>JQ1678, 367 bases, 10BC checksum.                  (367 aa)
Smith-Waterman score: 2423;   99.185% identity in 368 aa overlap

               10        20        30        40        50        60
MQN23. MNSTSTHFVPPRRVGIYEPVHQFGMWGESFKSNISNGTMNTPNHIIIPNNQKLDNNVSED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
JQ1678 MNSTSTHFVPPRRVGIYEPVHQFGMWGESFKSNISNGTMNTPNHIIIPNNQKLDNNVSED
               10        20        30        40        50        60

               70        80        90       100       110       120
MQN23. TSHGTAGTPHMFDQEASTSRHPDKIQRRLAQNREAARKSRLRKKAYVQQLETSRLKLIQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
JQ1678 TSHGTAGTPHMFDQEASTSRHPDKIQRRLAQNREAARKSRLRKKAYVQQLETSRLKLIQL
               70        80        90       100       110       120

              130       140       150       160       170       180
MQN23. EQELDRARQQGFYVGNGIDTNSLGFSETMNPGIAAFEMEYGHWVEEQNRQICELRTVLHG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
JQ1678 EQELDRARQQGFYVGNGIDTNSLGFSETMNPGIAAFEMEYGHWVEEQNRQICELRTVLHG
              130       140       150       160       170       180

              190       200       210       220       230       240
MQN23. HINDIELRSLVENAMKHYFELFRMKSSAAKADVFFVMSGMWRTSAERFFLWIGGFRPSDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
JQ1678 HINDIELRSLVENAMKHYFELFRMKSSAAKADVFFVMSGMWRTSAERFFLWIGGFRPSDL
              190       200       210       220       230       240

              250       260       270       280       290       300
MQN23. LKVLLPHFDVLTDQQLLDVCNLKQSCQQAEDALTQGMEKLQHTLADCVAAGQLGEGSYIP
       ::::::::::::::::::::::::::::::::::::::::::::   :::::::::::::
JQ1678 LKVLLPHFDVLTDQQLLDVCNLKQSCQQAEDALTQGMEKLQHTLRT-VAAGQLGEGSYIP
              250       260       270       280        290         

              310       320       330       340       350       360
MQN23. QVNSAMDRLEALVSFVNQADHLRHETLQQMYRILTTRQAARGLLALGEYFQRLRALSSSW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
JQ1678 QVNSAMDRLEALVSFVNQADHLRHETLQQMYRILTTRQAARGLLALGEYFQRLRALSSSW
     300       310       320       330       340       350         

               
MQN23. ATRHREPT
       ::::::::
JQ1678 ATRHREPT
     360       

Library scan:  0:00:00  total CPU time:  0:00:00