SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >MQJ16.9 (Universal genetic code) : 287 aa
 vs  library
 searching pcu56834 library

    341 residues in     1 sequences
The best scores are:                              s-w
PCU56834, 341 bases, CD0 checksum.                 (341) 255

>>PCU56834, 341 bases, CD0 checksum.                 (341 aa)
Smith-Waterman score: 255;   32.317% identity in 164 aa overlap

PCU568 MALDLMNNNSYKFRSKMEETAVQEAAAAGLQSVENLIKAISQSNHQTAYLSSSSSSETGD
               10        20        30        40        50        60

PCU568 TDYRAVTDVAVNKFKKFISLLDKNRTGHARFRRGPVQEKTGVEMLVNPIQNQIQNHGSDG
               70        80        90       100       110       120

                                                     10        20  
MQJ16.                                       MNSPHEKAVQAIRYGHSCAMRL
                                                                   
PCU568 FQVYRPTAVHPVQPVQPVQIQPVQLVQPVQRLPPVPKKENISTTINFAAPAVAVAAPATS
              130       140       150       160       170       180

             30        40         50        60        70        80 
MQJ16. KRRLNHPMADGGPLSSYDLAK-SIVESFSNAISILSAKPETEDDQFSDLSSRDSSPPPQG
                ::   :...... :   : :  .: :. :  .    ..:.:..  :   .:
PCU568 FMSSLTGDTDG---SGFQITNMSGFSSGSRPVSSLKRKCSS----MNDVSAK-CSGSSSG
              190          200       210           220        230  

                  90          100       110       120       130    
MQJ16. S---PSKKR-KIDST--NSSENWR-DDSPDPIYYDGYLWRKYGQKSIKKSNHQRSYYRCS
           :.::. .. ..    . . . .: : :   : . ::::::: :: : : :.::.::
PCU568 RCHCPKKKKLRVKKVVRMPAISMKTSDIP-P---DDFSWRKYGQKPIKGSPHPRGYYKCS
            240       250       260           270       280        

          140        150       160         170       180       190 
MQJ16. YNKDHNCEARKH-EQKIKDNPPVYRTTYFG-H-HTCKTEHNLDAIFIAGQDPLDDFKSTQ
         .  .: :::: :. . :.: .  .:: : : :. ....: ..  :  .: :       
PCU568 SVR--GCPARKHVERAV-DDPTMLIVTYEGEHNHSQSSNENTNTSHILESDGLKQS    
      290         300        310       320       330       340     

             200       210       220       230       240       250 
MQJ16. MIRFGKDQDQEKESRSNGFSLSVKHEEDIIKEQAIDQYREITSNDQDCQDVIEEYLSSPS

             260       270       280       
MQJ16. GSYPPSSSSGSESADFNSDLLFDNPDSWDRYDQFYF

Library scan:  0:00:00  total CPU time:  0:00:00