SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >MQJ16.10 (Universal genetic code) : 111 aa
 vs  library
 searching poppop3a library

    108 residues in     1 sequences
The best scores are:                              s-w
POPPOP3A, 108 bases, 1AA3 checksum.                (108) 209

>>POPPOP3A, 108 bases, 1AA3 checksum.                (108 aa)
Smith-Waterman score: 209;   34.579% identity in 107 aa overlap

                  10           20        30        40          50  
MQJ16. MATSG---FKHLVVVKFKED-TK--VDEILKGLENLVSQIDTVKSFEWGED--KESHDML
       :::      :: ....::.. :.  .:. ..   ::.. : :.:::.:: :   :: .. 
POPPOP MATRTPKLVKHTLLTRFKDEITREQIDNYINDYTNLLDLIPTMKSFNWGTDLGMESAELN
               10        20        30        40        50        60

             60        70         80        90       100       110 
MQJ16. RQGFTHAFSMTFENKDGYVAFT-SHPLHVEFSAAFTAVIDKIVLLDFPVAAVKSSVVATP
       : :.::::  :::.:.:   .  :  : . :. .:  .... ...:.             
POPPOP R-GYTHAFESTFESKSGLQEYLDSAAL-AAFAEGFLPTLSQRLVIDYFLY          
                70        80         90       100                  

Library scan:  0:00:00  total CPU time:  0:00:00