SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >MQD22.P2 (Universal genetic code) : 106 aa
 vs  library
 searching atfca851 library

    144 residues in     1 sequences
The best scores are:                              s-w
ATFCA851, 144 bases, 1DF checksum.                 (144) 216

>>ATFCA851, 144 bases, 1DF checksum.                 (144 aa)
Smith-Waterman score: 216;   42.453% identity in 106 aa overlap

               10        20        30        40        50        60
MQD22. MELSSRKPYFIEEEEEENLASSLSEMEAGFSGNNNNSNNHGNPQNGVVSSSRFSYGRLNS
       ::.: :::::::::.. ...: ::::::: :     :     :       : ..:     
ATFCA8 MEVSMRKPYFIEEEDD-GFVS-LSEMEAGVS-----S-----P-------SCYNY-----
               10         20              30                       

               70        80        90       100                    
MQD22. LRNSQSYYYNQYSVSSPRSVVSGRFHDFRFDIQQPHFLDSCFLCKK              
           ::::::..           .: .  .   :::::::::::::              
ATFCA8 ---PQSYYYNHHH---------HQFDNSYYGYGQPHFLDSCFLCKKRLGDNRDIFMYRGD
            40                 50        60        70        80    

ATFCA8 TPFCSEECREEQIERDEAKEKKQSLSTSVKAMRRNEKRSSSSSPTRSRNYAFRTGTVAAA
           90       100       110       120       130       140    

Library scan:  0:00:00  total CPU time:  0:00:00