SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >MQD22.P1 (Universal genetic code) : 713 aa
 vs  library
 searching atfca93 library

    661 residues in     1 sequences
The best scores are:                              s-w
ATFCA93, 661 bases, 1471 checksum.                 (661)2197

>>ATFCA93, 661 bases, 1471 checksum.                 (661 aa)
Smith-Waterman score: 2197;   52.762% identity in 724 aa overlap

                                                        10         
MQD22.                                          MSMMMMMGDGTVEEMM---
                                                             :.:   
ATFCA9 METKDKKEKGHMVLNSDNVFGSVSSSPTTTIQNPNYFTSFENPNFPYIFPKEEYEVMSKI
               10        20        30        40        50        60

         20        30        40        50        60        70      
MQD22. ENGSAGGSFGSGSEQAEDPKFGNESDVNELHDDEQPPPAKKKRYHRHTNRQIQEMEALFK
       :.:: : : :::    .::    :. . :    ..:: ::::::::::  :::.::::::
ATFCA9 ESGS-GKSTGSG----HDPV---ENTAIE----QEPPAAKKKRYHRHTASQIQQMEALFK
                70               80            90       100        

         80        90       100       110                          
MQD22. ENPHPDDKQRKRLSAELGLKPRQVKFWFQNRRTQ------------MKAE---LR-----
       :: ::: : : ::: .:::.: ::::::::.:::            .:::   :.     
ATFCA9 ENAHPDTKTRLRLSKKLGLSPIQVKFWFQNKRTQIKAQQSRSDNAKLKAENETLKTESQN
      110       120       130       140       150       160        

              120       130       140       150       160       170
MQD22. ------CLSCPSCGGPTVLGDIPFNEIHIENCRLREELDRLCCIASRYTGRPMQSMPPSQ
             :: : .::          : ...:: :::.:::::         : . ::    
ATFCA9 IQSNFQCLFCSTCG---------HN-LRLENARLRQELDRL---------RSIVSMR---
      170       180                 190                200         

              180       190       200       210       220       230
MQD22. PLINPSPMLPHHQPSLELDMSVYAGNFPEQSCTDMMMLPPQDTACFFPDQTANNNNNNNM
          ::::       : :.         ::   :                   :.:::.::
ATFCA9 ---NPSP-------SQEIT--------PE---T-------------------NKNNNDNM
           210                                            220      

              240       250       260       270       280       290
MQD22. LLADEEKVIAMEFAVSCVQELTKMCDTEEPLWIKKKSDKIGGEILCLNEEEYMRLFPWPM
       :.:.:::.: ::.::::..::.:::: .:::: ::. :.   : .::::::: ..: ::.
ATFCA9 LIAEEEKAIDMELAVSCARELAKMCDINEPLWNKKRLDN---ESVCLNEEEYKKMFLWPL
        230       240       250       260          270       280   

              300       310       320       330       340       350
MQD22. ENQNNKGDFLREASKANAVVIMNSITLVDAFLNADKWSEMFCSIVARAKTVQIISSGVSG
        :....  : ::::.::::...: :::: :::.::::::::  ::. :::.::::::.::
ATFCA9 MNDDDR--FRREASRANAVIMLNCITLVKAFLDADKWSEMFFPIVSSAKTAQIISSGASG
             290       300       310       320       330       340 

              360       370       380       390       400          
MQD22. ASGSLLLMFAELQVLSPLVPTREAYFLRYVEQNAETGNWAIVDFPIDSFHDQMQPMN-TI
        ::.:::                        :::: :.: .::::::    ...: . : 
ATFCA9 PSGTLLL------------------------QNAEEGKWMVVDFPID----RIKPASATT
                                     350       360           370   

     410       420       430       440        450       460        
MQD22. THEYKRKPSGCIIQDMPNGYSQVKWVEHVEVDEKHVH-ETFAEYVKSGMAFGANRWLDVL
       : .:.::::::::: : :::::: :::::::.::::. :.  :.:.::.::::.:::.::
ATFCA9 TDQYRRKPSGCIIQAMRNGYSQVTWVEHVEVEEKHVQDEVVREFVESGVAFGAERWLSVL
           380       390       400       410       420       430   

      470       480               490       500       510       520
MQD22. QRQCERIASLMARNITDLG--------VISSAEARRNIMRLSQRLVKTFCVNISTAYGQS
       .:::::.::::: ::::::        .: :.:::.:.:.::::.:::::.:: ...::.
ATFCA9 KRQCERMASLMATNITDLGGIYITCFTMIPSVEARKNLMKLSQRMVKTFCLNIINSHGQA
           440       450       460       470       480       490   

              530       540       550       560       570       580
MQD22. WTALSETTKDTVRITTRKMCEPGQPTGVVLCAVSTTWLPFSHHQVFDLIRDQHHQSLVAS
              :::::.:..::.:  :   :.: ::::.: ::.::.:::::.::... : : :
ATFCA9 ------PTKDTVKIVSRKVC--G---GLVPCAVSVTLLPYSHQQVFDLLRDNQRLSQVES
                 500            510       520       530       540  

              590       600        610       620       630         
MQD22. NSWHNVELMLQESCIDNSGSLIVYSTVD-VDSIQQAMNGEDSSNIPILPLGFSIVPVNPP
       :: :::::::::.: ::::::.:::::: : ..: :::::: :.::.::.:::.::::: 
ATFCA9 NSSHNVELMLQETCTDNSGSLLVYSTVDPV-AVQLAMNGEDPSEIPLLPVGFSVVPVNPS
            550       560       570        580       590       600 

     640       650       660       670       680       690         
MQD22. EGISVNSHSPPSCLLTVGIQVLASNVPTAKPNLSTVTTINNHLCATVNQITSALSNTITP
       .:.  .: : :::::::.::::.::: : . .::::..::...:::::.::::: : .  
ATFCA9 DGVEGSSVSSPSCLLTVAIQVLGSNVTTERLDLSTVSVINHRICATVNRITSALVNDVGN
             610       620       630       640       650       660 

     700       710   
MQD22. VIASSADVSNQEVS

Library scan:  0:00:00  total CPU time:  0:00:02