SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >MQD22.16 (Universal genetic code) : 300 aa
 vs  library
 searching atfca9 library

    297 residues in     1 sequences
The best scores are:                              s-w
ATFCA9, 297 bases, 2F0 checksum.                   (297)1146

>>ATFCA9, 297 bases, 2F0 checksum.                   (297 aa)
Smith-Waterman score: 1146;   57.827% identity in 313 aa overlap

               10         20           30         40        50     
MQD22. MAVQAHHHPSTLFFLN-NGQEGND---QPHKSQFHSIN-AGVDTRKRAREVSSVIDLDIT
       ::.::.: :: .:: : ::::..:   ::. . : ... ::::.:::.::: :       
ATFCA9 MAIQAQH-PSRFFFNNSNGQEASDCSLQPQDTPFTNFTKAGVDSRKRSREVYS-------
                10        20        30        40        50         

          60        70            80        90       100       110 
MQD22. AAPMNPPPQTPPQVIG----RRQNPNVVSTGLRLSREQSQNQEQRFLSFPITGDVAGEIK
       .: :::::  : :::      ...:::::::::: ..:::::.: : :.:  :::.:.::
ATFCA9 SALMNPPPPKPSQVIDITELLQKTPNVVSTGLRLFHDQSQNQQQFFSSLP--GDVTGKIK
             60        70        80        90       100         110

             120       130       140       150       160       170 
MQD22. SQTDELNRFLQIQGEQLKRMLAENSERNYRELLRTTEESVRRRLREKEAEIEKATRRHVE
        : :::.::.: :::.:.: ::.: :: : ::: ..:: : :.::.::::.:::::::.:
ATFCA9 RQRDELDRFIQTQGEELRRTLADNRERRYVELLCAAEEIVGRKLRKKEAELEKATRRHAE
              120       130       140       150       160       170

             180       190       200       210       220           
MQD22. LEARATQIETEARAWQMRAAAREAEATSLQAQLHQAVVVAHGGGVITTVEPQS--GSVDG
       ::::...:  ::: ::.:::.::::..::.:.:.::  .:.    . :.  ::  :  ::
ATFCA9 LEARVAHIVEEARNWQLRAATREAEVSSLHAHLQQA--IANR---LDTAAKQSTFGE-DG
              180       190       200         210          220     

     230         240       250       260       270        280      
MQD22. VD--EAEDAESAYVDPDRVEMIGPGCRICRRRSATVLALPCRHLVMCTECD-GSVRICPL
        :  :::::::.::::.:.:.:::.::::::.::::.::::.::..:. :: :.::.::.
ATFCA9 GDAEEAEDAESVYVDPERIELIGPSCRICRRKSATVMALPCQHLILCNGCDVGAVRVCPI
          230       240       250       260       270       280    

        290       300
MQD22. CLSTKNSSVEVFYS
       ::..:.:.:::.. 
ATFCA9 CLAVKTSGVEVLF 
          290        

Library scan:  0:00:00  total CPU time:  0:00:00