SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >MQD22.14 (Universal genetic code) : 203 aa
 vs  library
 searching atp4_arath library

    203 residues in     1 sequences
The best scores are:                              s-w
ATP4_ARATH, 203 bases, 1F52 checksum.              (203)1285

>>ATP4_ARATH, 203 bases, 1F52 checksum.              (203 aa)
Smith-Waterman score: 1285;   100.000% identity in 203 aa overlap

               10        20        30        40        50        60
MQD22. MFKQASRLLSRSVAAASSKSVTTRAFSTELPSTLDSTFVEAWKKVAPNMDPPQTPSAFMK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
ATP4_A MFKQASRLLSRSVAAASSKSVTTRAFSTELPSTLDSTFVEAWKKVAPNMDPPQTPSAFMK
               10        20        30        40        50        60

               70        80        90       100       110       120
MQD22. PRPSTPSSIPTKLTVNFVLPYTSELTGKEVDMVIIPASTGQMGVLPGHVPTIAELKPGIM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
ATP4_A PRPSTPSSIPTKLTVNFVLPYTSELTGKEVDMVIIPASTGQMGVLPGHVPTIAELKPGIM
               70        80        90       100       110       120

              130       140       150       160       170       180
MQD22. SVHEGTDVKKYFLSSGFAFLHANSVADIIAVEAVPLDHIDPSQVQKGLAEFQQKLASATT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
ATP4_A SVHEGTDVKKYFLSSGFAFLHANSVADIIAVEAVPLDHIDPSQVQKGLAEFQQKLASATT
              130       140       150       160       170       180

              190       200   
MQD22. DLEKAEAQIGVEVHSAINAALSG
       :::::::::::::::::::::::
ATP4_A DLEKAEAQIGVEVHSAINAALSG
              190       200   

Library scan:  0:00:00  total CPU time:  0:00:00